Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00653 ATGGCGGTTTCTCCCCACTCTTTTCCGCCGAGGAAACGGCGGCCGTCCGCCGCCGCTTTCGTCTCTCCCAAACTCTCCGTCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCCCAAGAAATCTCCGGCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCAAGATTGCTTGAGATTTTCCTCGACGACCTCCGCCGCAACCGGATCGTTTCGCTCTCCGCCTCCGCCTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGATTGTTCTAACGGAAGTAAGATGTGGTTACTCACACAGAATGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATCTTCCCTGTCAAAGACGCTGAATTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCCGCTTTCCTCGATCCAAGAGATGAAACTCTCCGATTCAGATTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTCGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTGGAAGATGAGATTCAGAATCAAACGGATGAGAAATCGAGATCGGACGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTATATGGAGCATCGACGGCGGAATATGGTTTCCGGCGGAAAGATTCGATTTCCGATTTGCCTGTACCGGCGGATTTCAGATGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATAACTCTGTGGATTGAATCTGGGCATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGATGTAACGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAATAAAGCGGCGTTAGAAGCAATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGCTAATTCTTCCGTGAACGACGTCGTGTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTGCCGTTACTCGTCCGATATCTCAACTCCGACAACCCGATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTCGAAGCCAACAAATCGCTGATAATGGAAACCGACGGCGCGCTGATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGTAACGCCGCTGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGATTGGGAAGGAAGACACGTGTCATAAAGGGATTGCTTGATTTGGCTAAAGACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGATTAATCGAAGGTGGGATTATGGAGACGGTAAGTCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAAGGCTCCGATAGGGCCAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAACAGATGGGGAGTGGGACAATTAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGTAATAGGTGGTGCCGGAGGAGATTCCTTAACGGTTACTTCGTCGAGAATCGGCGGCAACTCAACCACCATTGTTAGTTCGTCAAGAGGAGCAACTGTGCATAGCTAG 2064 50.05 MAVSPHSFPPRKRRPSAAAFVSPKLSVPILLESLLSLSQEISGMKPLQFLLNRYSNSMIRKSRLLEIFLDDLRRNRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAELTEDVEELFYLLRNQCSESAAFLDPRDETLRFRLLKMIDRIKDEIVPDYSELSEIFSRIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTAEYGFRRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESNKERVNDVTLNKAALEAMRMTATFLVNKLATSANSSVNDVVYELRVLAKTDSGSRGYIAQAGALPLLVRYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIKGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGIMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWEQMGSGTIRGRRKAASLLRILRRWAAGLDVIGGAGGDSLTVTSSRIGGNSTTIVSSSRGATVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21013803 21015866 - ClCG04G006430.1 Cla04g00653 270881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00653 687 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Cla04g00653 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Cla04g00653 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 659 - -
Cla04g00653 687 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cla04g00653 687 Gene3D - 54 141 IPR036537 GO:0007166
Cla04g00653 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Cla04g00653 687 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Cla04g00653 687 PANTHER U BOX DOMAIN-CONTAINING 11 659 - -
Cla04g00653 687 Gene3D - 370 647 IPR011989 -
Cla04g00653 687 SUPERFAMILY RING/U-box 260 341 - -
Cla04g00653 687 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cla04g00653 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
Cla04g00653 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cla04g00653 687 Coils Coil 208 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00696 Cla-Chr3:8402840 Cla04g00653 Cla-Chr4:21013803 5.16E-143 dispersed
Cla04g00653 Cla-Chr4:21013803 Cla11g00578 Cla-Chr11:6545632 2.68E-111 dispersed
Cla04g00653 Cla-Chr4:21013803 Cla01g01287 Cla-Chr1:26145141 2.74E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00653 - - csv:101205143 1192.95