Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00654 ATGCCGGCGTTCGACGACAATCCTCCGCCGGGGGGACTCACCCGCGGCGACTCCTTGCCTGAGGGAATTCTCTTCGGCAAGTACGAACTCGGTAAGCTTCTCGGATGTGGAGCTTTCGCTAAGGTCTATCATGGCAGAAACGTTGTTACAGGACAGAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTTCTGAAAGGGGGTTTCACGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGACTCCGTCATCCCAACGTCGTTCGTCTCTTTGAAGTTCTCGCCACTAAGACCAAGATTTATTTCGTTATGGAGTTCGCAAAAGGAGGAGAACTGTTTGCCAAAGTTTCTAAAGGAAGATTCAGTGAGAATCTCAGCCGTCGGTACTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGCGATTTGAAACCAGAAAATCTCCTTCTCGATGATAATTTCGATCTCAGAGTTTCGGATTTTGGACTTAGTGCTCTTACAGATCAGATTCGTCCTGACGGATTACTTCACACGCTTTGTGGAACTCCGGCCTACGTCGCACCGGAGATTCTCGCTAAAAAAGGCTACGACGGCGCTAAAATCGATGTCTGGTCTTGCGGTATAATCCTCTATGTTCTTACAACTGGATACCTTCCTTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGTTGCCCGAAGTGGACATCTCCAGATCTACGGCGGTTTCTCTCGAGGCTTCTCGATACGAATCCTGAGACGAGGATTACCGTGGATGAGATTTATCGAGATCCGTGGTTTGTGAAGGGATTTCAGGAGGAGAAATTTCAACAACTTGAAGATTCTCCTTCTGAGCTTTACGGTGATGTGAACAATGCGAAATGTTTGACTGCTTTTGATCTTATTTCTTTCTCACCTGGTTTCGATTTGACTGGACTGATCAATGAGACGGAATTTTCTTCTGGCGTTGAGAGGTTTCTCTCCGCTGAGTCGCCTGAGAAGATCATTGTGACGGTTGAGGAGATTACGAAGTCGGAGAATGCGGTTGTGGAAAAGAACGGCTGGGGAGCTAAAGTGGAAGGAATGGACGGCGGATTCGTCGCCGTGATCGATATTTTCCGGCTGACGGAGGAATTGGTGGTTGTTGAGATTAAAAACAGAGTGAGGGAAATAGATCAAGATCGTCAAATTTGGAAAGATATATTGAGACCTCAACTTGAGAGTTTAATCTACCGGTCGGATTGA 1290 46.51 MPAFDDNPPPGGLTRGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVVTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIYRDPWFVKGFQEEKFQQLEDSPSELYGDVNNAKCLTAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEITKSENAVVEKNGWGAKVEGMDGGFVAVIDIFRLTEELVVVEIKNRVREIDQDRQIWKDILRPQLESLIYRSD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21052121 21053410 + ClCG04G006440.1 Cla04g00654 270882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00654 429 SUPERFAMILY Protein kinase-like (PK-like) 24 303 IPR011009 -
Cla04g00654 429 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 21 427 - -
Cla04g00654 429 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00654 429 PANTHER - 21 427 - -
Cla04g00654 429 Gene3D Kinase associated domain 1, KA1 312 427 - -
Cla04g00654 429 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Cla04g00654 429 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Cla04g00654 429 Gene3D Transferase(Phosphotransferase) domain 1 22 311 - -
Cla04g00654 429 Pfam NAF domain 309 367 IPR004041 GO:0007165
Cla04g00654 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cla04g00654 429 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00654 429 CDD CIPK_C 312 421 - -
Cla04g00654 429 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01867 Cla-Chr2:33855379 Cla04g00654 Cla-Chr4:21052121 0 dispersed
Cla04g00654 Cla-Chr4:21052121 Cla06g01224 Cla-Chr6:25477279 3.96E-146 dispersed
Cla10g02039 Cla-Chr10:36123710 Cla04g00654 Cla-Chr4:21052121 2.29E-45 dispersed
Cla04g00654 Cla-Chr4:21052121 Cla04g00656 Cla-Chr4:21159123 3.85E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80493 PF00069 Pkinase 2.40E-70 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00654 - K12761 csv:116403168 801.201