Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00656 ATGGAAAATTTCGCTGAAGCTCCCTTCCATTTCATTGCGTACATTCTCAATCTTCTTGCTGTTTTGCAGCTAATTTCATCAGATTCTTCACAATTCCTCTCGCTTTGTTGTTATTTTATTTTAATCGAGAGAGTGATTCTTCCATTTCTCGACGTTGAACTCGGTTTAGTGGTATGTGATGATGAAGTTATGAATCGGCATTTCTATTATTTCTTGTTCTCTTGTCTTATATCTATTTCCTCTTTTCCGTTACGAAGTTTTGATGTCTGCCGCCTTGACTGTATTTTATGGAATTGGATGACTCCGTACATTCTTATTCCATATCAGTTATATCCATGTCAACTAGCTATAGGTGGAATTCTTTCTGACTTGCCTCATATTCTGCATACATTTTTCATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGCGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGTGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGCGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTATTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCAAAGGGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAAAAGTCAAACGGAGATACTTTGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAGCTCAGCAACAGTCTTCTACTGATTCATTATAA 1797 39.51 MENFAEAPFHFIAYILNLLAVLQLISSDSSQFLSLCCYFILIERVILPFLDVELGLVVCDDEVMNRHFYYFLFSCLISISSFPLRSFDVCRLDCILWNWMTPYILIPYQLYPCQLAIGGILSDLPHILHTFFMENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDRDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQEAQQQSSTDSL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21159123 21162092 - ClCG04G006460.2 Cla04g00656 270884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00656 598 Coils Coil 572 592 - -
Cla04g00656 598 Pfam Protein kinase domain 144 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00656 598 Gene3D Kinase associated domain 1, KA1 443 569 - -
Cla04g00656 598 Gene3D Phosphorylase Kinase; domain 1 134 223 - -
Cla04g00656 598 PANTHER - 134 581 - -
Cla04g00656 598 CDD STKc_SnRK3 143 397 - -
Cla04g00656 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Cla04g00656 598 Gene3D Transferase(Phosphotransferase) domain 1 224 405 - -
Cla04g00656 598 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 134 581 - -
Cla04g00656 598 Pfam NAF domain 446 504 IPR004041 GO:0007165
Cla04g00656 598 SUPERFAMILY Protein kinase-like (PK-like) 140 399 IPR011009 -
Cla04g00656 598 ProSiteProfiles Protein kinase domain profile. 144 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00656 598 ProSiteProfiles NAF domain profile. 444 468 IPR018451 GO:0007165
Cla04g00656 598 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Cla04g00656 598 CDD CIPK_C 450 564 - -
Cla04g00656 598 SMART serkin_6 144 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01868 Cla-Chr2:33859354 Cla04g00656 Cla-Chr4:21159123 0 dispersed
Cla03g00613 Cla-Chr3:7315854 Cla04g00656 Cla-Chr4:21159123 4.17E-170 dispersed
Cla03g00713 Cla-Chr3:8613905 Cla04g00656 Cla-Chr4:21159123 0 dispersed
Cla04g00656 Cla-Chr4:21159123 Cla06g01224 Cla-Chr6:25477279 0 dispersed
Cla04g00654 Cla-Chr4:21052121 Cla04g00656 Cla-Chr4:21159123 3.85E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80494 PF00069 Pkinase 4.60E-76 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00656 K07198 - csv:116406388 828.55