Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00656 | ATGGAAAATTTCGCTGAAGCTCCCTTCCATTTCATTGCGTACATTCTCAATCTTCTTGCTGTTTTGCAGCTAATTTCATCAGATTCTTCACAATTCCTCTCGCTTTGTTGTTATTTTATTTTAATCGAGAGAGTGATTCTTCCATTTCTCGACGTTGAACTCGGTTTAGTGGTATGTGATGATGAAGTTATGAATCGGCATTTCTATTATTTCTTGTTCTCTTGTCTTATATCTATTTCCTCTTTTCCGTTACGAAGTTTTGATGTCTGCCGCCTTGACTGTATTTTATGGAATTGGATGACTCCGTACATTCTTATTCCATATCAGTTATATCCATGTCAACTAGCTATAGGTGGAATTCTTTCTGACTTGCCTCATATTCTGCATACATTTTTCATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGCGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGTGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGCGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTATTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCAAAGGGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAAAAGTCAAACGGAGATACTTTGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAGCTCAGCAACAGTCTTCTACTGATTCATTATAA | 1797 | 39.51 | MENFAEAPFHFIAYILNLLAVLQLISSDSSQFLSLCCYFILIERVILPFLDVELGLVVCDDEVMNRHFYYFLFSCLISISSFPLRSFDVCRLDCILWNWMTPYILIPYQLYPCQLAIGGILSDLPHILHTFFMENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDRDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQEAQQQSSTDSL | 598 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21159123 | 21162092 | - | ClCG04G006460.2 | Cla04g00656 | 270884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00656 | 598 | Coils | Coil | 572 | 592 | - | - | |
Cla04g00656 | 598 | Pfam | Protein kinase domain | 144 | 398 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00656 | 598 | Gene3D | Kinase associated domain 1, KA1 | 443 | 569 | - | - | |
Cla04g00656 | 598 | Gene3D | Phosphorylase Kinase; domain 1 | 134 | 223 | - | - | |
Cla04g00656 | 598 | PANTHER | - | 134 | 581 | - | - | |
Cla04g00656 | 598 | CDD | STKc_SnRK3 | 143 | 397 | - | - | |
Cla04g00656 | 598 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 262 | 274 | IPR008271 | GO:0004672|GO:0006468 | |
Cla04g00656 | 598 | Gene3D | Transferase(Phosphotransferase) domain 1 | 224 | 405 | - | - | |
Cla04g00656 | 598 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 134 | 581 | - | - | |
Cla04g00656 | 598 | Pfam | NAF domain | 446 | 504 | IPR004041 | GO:0007165 | |
Cla04g00656 | 598 | SUPERFAMILY | Protein kinase-like (PK-like) | 140 | 399 | IPR011009 | - | |
Cla04g00656 | 598 | ProSiteProfiles | Protein kinase domain profile. | 144 | 398 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00656 | 598 | ProSiteProfiles | NAF domain profile. | 444 | 468 | IPR018451 | GO:0007165 | |
Cla04g00656 | 598 | ProSitePatterns | Protein kinases ATP-binding region signature. | 150 | 173 | IPR017441 | GO:0005524 | |
Cla04g00656 | 598 | CDD | CIPK_C | 450 | 564 | - | - | |
Cla04g00656 | 598 | SMART | serkin_6 | 144 | 398 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01868 | Cla-Chr2:33859354 | Cla04g00656 | Cla-Chr4:21159123 | 0 | dispersed | |
Cla03g00613 | Cla-Chr3:7315854 | Cla04g00656 | Cla-Chr4:21159123 | 4.17E-170 | dispersed | |
Cla03g00713 | Cla-Chr3:8613905 | Cla04g00656 | Cla-Chr4:21159123 | 0 | dispersed | |
Cla04g00656 | Cla-Chr4:21159123 | Cla06g01224 | Cla-Chr6:25477279 | 0 | dispersed | |
Cla04g00654 | Cla-Chr4:21052121 | Cla04g00656 | Cla-Chr4:21159123 | 3.85E-137 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80494 | PF00069 | Pkinase | 4.60E-76 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00656 | K07198 | - | csv:116406388 | 828.55 |