Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00678 ATGGAAGACAAATCCTTGCAGAAGGTTGCGATTTCAGGCCCAATCTTAGCCTCTTTGATCCAACGCTTCTCCTCCTCCTCCGGCGCCGTCGACGGCCTTCTTTTCGGTCATGTCTCCGACGTTACCCCCTTATCCCTCTCCGATGATTCATCTTCTTCAACCAACACCGAACCATCACTACGCGTCGCCACCATCACCGGGTTTCTCTGCTCCGGTACCACCAATAGCTTCTACGACTCTCTCGGACGTGTAGATTCGAAATCGCTTAACCGCTTTCTCGACCGACACCAGACCGACGGTCAAGCTCAACCCCACGATTCCTTACTAGGTTGGTTTGCCGGCCGCCGGAGGACTCAGCTTCGACCTTCCATGCGTGAATACTTAGTGAGTTCTTCTTTGTCTTCGATGAAGCAATTGTCGTTTCCTGTTAAAGACGCTGTGAATCCCACCAATCTAATCCCTAGTGTGTTTCTGCTTCTGACTTCGCCGCTATCCGATCAAATTATCCACACACATGAGTACCGCGCTTTTCAATTTCGGTCGTCCATTGAGTTCTTTGAGCCGAAATCGATTGACATTGTGAATATTGGGCCGGCATTTCGTAGTCACTATGGATCGTTTACCCCTAATTCTCCTTTCCCCCATTTGCACTGCGAGATGAGAGCTTCTCCGATGAATGAGGATAAGAATGATGAGAATTTGAATCTGATGAAGCAAAACTCGAAAGATCAGAAGCAAATGAATGAGGTTGCTGAAGGGTTCGAGGTTGGGCACTTGACCCGGTTACTGGGTTCGGAGGCAGCAAATTATACTGCTGGGTTGGAAGATTTATACGAAAAAATGCTTGCCAAGACTGAGTCCTTGGCGCGGCTCGTAGAGAAGAGCTCTGCTCAGGTTCTTGAGCAGGAAAACCACATCAGGAAGTTAAGATATAAAGTTGCGAGAGAAAAGATATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATTGGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCGTGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAATTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTAGGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA 2046 45.01 MEDKSLQKVAISGPILASLIQRFSSSSGAVDGLLFGHVSDVTPLSLSDDSSSSTNTEPSLRVATITGFLCSGTTNSFYDSLGRVDSKSLNRFLDRHQTDGQAQPHDSLLGWFAGRRRTQLRPSMREYLVSSSLSSMKQLSFPVKDAVNPTNLIPSVFLLLTSPLSDQIIHTHEYRAFQFRSSIEFFEPKSIDIVNIGPAFRSHYGSFTPNSPFPHLHCEMRASPMNEDKNDENLNLMKQNSKDQKQMNEVAEGFEVGHLTRLLGSEAANYTAGLEDLYEKMLAKTESLARLVEKSSAQVLEQENHIRKLRYKVAREKISRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRLTEGNIKEGLADVVRSRDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCRAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21530776 21540024 + ClCG04G006690.2 Cla04g00678 270906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 252 272 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 1 21 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 226 246 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 46 70 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 275 301 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 161 181 IPR023241 -
Cla04g00678 681 PRINTS Plant protein family FAM175 signature 198 218 IPR023241 -
Cla04g00678 681 Pfam AP2 domain 378 437 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 SMART rav1_2 379 451 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 Gene3D AP2/ERF domain 379 446 IPR036955 GO:0003700|GO:0006355
Cla04g00678 681 PANTHER OS07G0540200 PROTEIN 1 320 - -
Cla04g00678 681 PRINTS Protein family FAM175 signature 76 95 IPR023238 -
Cla04g00678 681 PRINTS Protein family FAM175 signature 110 126 IPR023238 -
Cla04g00678 681 PRINTS Protein family FAM175 signature 31 48 IPR023238 -
Cla04g00678 681 PRINTS Protein family FAM175 signature 190 204 IPR023238 -
Cla04g00678 681 PRINTS Protein family FAM175 signature 11 29 IPR023238 -
Cla04g00678 681 CDD AP2 378 447 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 PRINTS Ethylene responsive element binding protein signature 411 427 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 PRINTS Ethylene responsive element binding protein signature 380 391 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 PANTHER ABRAXAS FAMILY MEMBER 1 320 IPR023238 -
Cla04g00678 681 ProSiteProfiles AP2/ERF domain profile. 379 445 IPR001471 GO:0003700|GO:0006355
Cla04g00678 681 Coils Coil 501 521 - -
Cla04g00678 681 SUPERFAMILY DNA-binding domain 379 447 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00678 Cla10g02119 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00678 Cla-Chr4:21530776 Cla08g01453 Cla-Chr8:27429935 1.46E-31 dispersed
Cla02g01090 Cla-Chr2:23125164 Cla04g00678 Cla-Chr4:21530776 2.56E-47 transposed
Cla11g00574 Cla-Chr11:6486334 Cla04g00678 Cla-Chr4:21530776 3.69E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60901 PF00847 AP2 1.80E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00678 K20799 - csv:116403565 609.372