Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00684 ATGTCCATGAAAACACAAGTAGTAGCTTCAGATTGGATTTTTCTTCAACTTGGAGATCATTCTGTTTCCAGTCAACTTGAAAACAGAAACTGCTTTCATCTTCTACTCAGCACCACAGAATATGATGAGAACAGCTTTGGATCGATACCTGCTTTTCGAGTTTCATCAACATTTGTAGTAACCTTGCTGATGTTGTTCATGATCTGCAAGAAAAAAAATCCACTGATTCGAAAATCTCTTAACGCCAATTTCAATCTCTGGAACTTTCAAACCATGGCCACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTCCGCCGCCGACCCATGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGCGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGACTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACACGCAGTCTATTTCTCAGTGTATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGGTGACGAGCGACGCGGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGATGAGCAGTCCTTATAAAGGGGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTATGCCTCTTATCGGACGACGGTTGTGATGAACGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTTTCACTGGGAAGTGACAACGATGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGTTGTGTAGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGATTCCAAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAACGATAACAATTAG 1209 48.55 MSMKTQVVASDWIFLQLGDHSVSSQLENRNCFHLLLSTTEYDENSFGSIPAFRVSSTFVVTLLMLFMICKKKNPLIRKSLNANFNLWNFQTMATSVSHSPDFRPEVSVPPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATVTSDAVITPMDVVKQRLQLMSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSLGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWIPRMMFHAPAAAICWSTYEASKTFFQHLHNDNN 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21617124 21620633 - ClCG04G006760.2 Cla04g00684 270912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00684 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
Cla04g00684 402 PANTHER MITOFERRIN-LIKE 93 401 - -
Cla04g00684 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 291 IPR018108 -
Cla04g00684 402 PANTHER MITOFERRIN-1-RELATED 93 401 - -
Cla04g00684 402 SUPERFAMILY Mitochondrial carrier 114 388 IPR023395 -
Cla04g00684 402 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Cla04g00684 402 PRINTS Mitochondrial carrier protein signature 312 334 IPR002067 GO:0055085
Cla04g00684 402 PRINTS Mitochondrial carrier protein signature 134 148 IPR002067 GO:0055085
Cla04g00684 402 PRINTS Mitochondrial carrier protein signature 264 282 IPR002067 GO:0055085
Cla04g00684 402 PRINTS Mitochondrial carrier protein signature 121 134 IPR002067 GO:0055085
Cla04g00684 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 303 393 IPR018108 -
Cla04g00684 402 Gene3D Mitochondrial carrier domain 202 402 IPR023395 -
Cla04g00684 402 Pfam Mitochondrial carrier protein 208 293 IPR018108 -
Cla04g00684 402 Pfam Mitochondrial carrier protein 117 202 IPR018108 -
Cla04g00684 402 Pfam Mitochondrial carrier protein 304 396 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01883 Cla-Chr2:34027113 Cla04g00684 Cla-Chr4:21617124 9.60E-151 dispersed
Cla04g00684 Cla-Chr4:21617124 Cla02g02228 Cla-Chr2:37417896 1.34E-30 dispersed
Cla11g00459 Cla-Chr11:5202512 Cla04g00684 Cla-Chr4:21617124 1.90E-09 dispersed
Cla04g00684 Cla-Chr4:21617124 Cla08g00747 Cla-Chr8:19756856 1.38E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00684 K15113 - csv:101210464 592.038