Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00701 ATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCGGAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCGAAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGGCTGTGAAACTATGGATCCCAAAGCTCTAAAGCAGCAATTTCCATTTTACGACGACCTTCATGCCATTTTTACTGCAAGGATGCAAAACAACTGGTGGATCGAAGCCGAAGATCGATCGGGAGGCTCCAAATGGAAAACCACCGAGCGATTCTCTAGTGAGGATCAGGACGGTAATAAAGAAGAAAACGACGAAGACGAAGCATTCGGGTCAAGTACGAAAAGGAAAAAGGGTACAAAAAAGGGGAGATGGATAAGAGATCAATTAGAACATAAGAGGAAATTGAAGGAAATATTGAAGGGTTTTGTGGAAAGAGAGATGGAAATGGAGAGGCAATGGAGAGAAGCATTTAGGGTTAGAGAGGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGGATGAAAATGGAAGCCATAGAGAGAGAGAAGATGATGATGGAGATATTATGGAGAGAAAAAGAAGAGAAGAGGAGAGAAAGAGAGGAAGAAAGGGCTGAGAAGAGAGATGCTTTGATCTCAGCTTTATTGAGAAGCCTCACATAA 816 44.73 MEDYCDLRRAILDRRPNRIGVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKGCETMDPKALKQQFPFYDDLHAIFTARMQNNWWIEAEDRSGGSKWKTTERFSSEDQDGNKEENDEDEAFGSSTKRKKGTKKGRWIRDQLEHKRKLKEILKGFVEREMEMERQWREAFRVREEERRLKEEEWRMKMEAIEREKMMMEILWREKEEKRREREEERAEKRDALISALLRSLT 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21894415 21898126 - ClCG04G006960.1 Cla04g00701 270929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00701 271 MobiDBLite consensus disorder prediction 135 149 - -
Cla04g00701 271 Gene3D - 32 93 - -
Cla04g00701 271 MobiDBLite consensus disorder prediction 135 175 - -
Cla04g00701 271 PANTHER - 1 271 - -
Cla04g00701 271 Coils Coil 242 264 - -
Cla04g00701 271 Pfam Myb/SANT-like DNA-binding domain 31 115 IPR044822 -
Cla04g00701 271 CDD GT1 32 95 - -
Cla04g00701 271 ProSiteProfiles Myb-like domain profile. 31 88 IPR001005 -
Cla04g00701 271 PANTHER - 1 271 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00701 Cla10g02096 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00701 Cla-Chr4:21894415 Cla07g01074 Cla-Chr7:27342323 6.71E-23 dispersed
Cla10g02096 Cla-Chr10:36676511 Cla04g00701 Cla-Chr4:21894415 9.04E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60904 PF13837 Myb_DNA-bind_4 1.90E-18 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00701 - - csv:101218250 363.229