Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00705 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGTACAATAATGTAATTTTTTTTTTTTTGGCGAATGCATGTATGCTTTTTGCTGCTCACGGGAAAAGCCACTTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCGCCTCCTCTGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCTGCTTACATCGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCCGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATATGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1389 45.5 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEYNNVIFFFLANACMLFAAHGKSHFGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21971987 21978117 + ClCG04G007020.2 Cla04g00705 270933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00705 462 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 449 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cla04g00705 462 TIGRFAM cax: calcium/proton exchanger 77 436 IPR004798 GO:0006816|GO:0015369
Cla04g00705 462 Gene3D - 288 437 IPR044880 -
Cla04g00705 462 Gene3D - 134 287 IPR044880 -
Cla04g00705 462 Pfam Sodium/calcium exchanger protein 293 434 IPR004837 GO:0016021|GO:0055085
Cla04g00705 462 Pfam Sodium/calcium exchanger protein 93 265 IPR004837 GO:0016021|GO:0055085
Cla04g00705 462 TIGRFAM caca2: calcium/proton exchanger 58 436 - -
Cla04g00705 462 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 449 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00705 Cla10g02088 CCT
Cla04g00705 Cla10g02088 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00705 Cla-Chr4:21971987 Cla10g00392 Cla-Chr10:5330239 5.93E-110 dispersed
Cla10g02088 Cla-Chr10:36577096 Cla04g00705 Cla-Chr4:21971987 9.35E-155 wgd
Cla03g00075 Cla-Chr3:795633 Cla04g00705 Cla-Chr4:21971987 1.61E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00705 K07300 - csv:101213857 751.51