Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00716 ATGAGCATACCTCAACCACAAACTTCGCAAACAAAATCGAGTGAACGACGACGCTTTGACCCCACCGTTCCAGTACGACGGGATAAGGCAGAGATAAGGCCAAGACGCACAGAAGCCGTCAGATGGATTCGTCCCATAATCCAACGGACACAAAACCACCACAACAGATTATGTGGCAATCGCCGATCACAATTCCCCTTTCTCAACCACATAATAACCCAACCAAAATCCCTACTTCCATCTCACACTCTTCAATTCCTCTCTCAACTCCTCGTCGTCGTCGTCGTCGTAATGGCCACCGCTGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACAATATCCAACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAATATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCCGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGGTTCGCAGTTCAGGCTGCTGTTACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTCAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTCTTCTTCTTAA 1155 52.73 MSIPQPQTSQTKSSERRRFDPTVPVRRDKAEIRPRRTEAVRWIRPIIQRTQNHHNRLCGNRRSQFPFLNHIITQPKSLLPSHTLQFLSQLLVVVVVVMATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISNRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSSS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22100950 22104062 - ClCG04G007140.2 Cla04g00716 270944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00716 384 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 99 382 - -
Cla04g00716 384 Pfam Chlorophyll A-B binding protein 156 352 IPR022796 -
Cla04g00716 384 MobiDBLite consensus disorder prediction 1 26 - -
Cla04g00716 384 Gene3D Chlorophyll a/b binding protein domain 150 384 - -
Cla04g00716 384 SUPERFAMILY Chlorophyll a-b binding protein 141 380 - -
Cla04g00716 384 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 99 382 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00716 Cla-Chr4:22100950 Cla10g02086 Cla-Chr10:36548099 2.62E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00716 K08915 - csv:101208740 544.658