Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g00736 | ATGGCAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGATTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACAGTATCAACGGCCACGGTTGCAGCATCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA | 507 | 47.14 | MAALETAGADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22386705 | 22387946 | + | ClCG04G007390.1 | Cla04g00736 | 270964 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g00736 | 168 | PANTHER | ZINC FINGER, RING-CH-TYPE | 27 | 168 | - | - | |
| Cla04g00736 | 168 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 33 | 99 | IPR011016 | GO:0008270 | |
| Cla04g00736 | 168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 102 | IPR013083 | - | |
| Cla04g00736 | 168 | SUPERFAMILY | RING/U-box | 38 | 96 | - | - | |
| Cla04g00736 | 168 | SMART | ringv_2 | 40 | 93 | IPR011016 | GO:0008270 | |
| Cla04g00736 | 168 | CDD | RING_CH-C4HC3_MARCH | 41 | 93 | - | - | |
| Cla04g00736 | 168 | Pfam | RING-variant domain | 41 | 92 | IPR011016 | GO:0008270 | |
| Cla04g00736 | 168 | PANTHER | OS01G0850200 PROTEIN | 27 | 168 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00736 | Cla10g02055 | CCT | |
| Cla04g00736 | Cla10g02055 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00736 | Cla-Chr4:22386705 | Cla07g00249 | Cla-Chr7:2744188 | 7.84E-18 | dispersed | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla04g00736 | Cla-Chr4:22386705 | 1.18E-48 | wgd | |
| Cla11g00617 | Cla-Chr11:7083177 | Cla04g00736 | Cla-Chr4:22386705 | 1.27E-53 | wgd | |
| Cla03g00103 | Cla-Chr3:1069243 | Cla04g00736 | Cla-Chr4:22386705 | 6.79E-36 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g00736 | - | - | mcha:111019441 | 224.172 |