Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00746 ATGGGGGAATTAGATCAAGTGCAGGTATTTGGTGGATGGATGAGTCCCTTTAGCCGTAGAGTGGAGTTGGGTTTGAAACTCAAAGCCATAAAATATGAATATATTGAGGAAGACTTGAAGAATAAGAGCCATTTGCTTCTGAAATACAATCCAATTTACAAGAAGGTTCCTGTGCTCATTCACAATGGAAACCCCATTTCAGAGTCGATTATCATCCTTGAATACGTTGATGAAGTCTGGAATTCAGTTTACCCTTTCTTCCCTCAAGATCTCTATCAAAGAGCTCAAGCAAGGTTTTGGGCTAAGTTTATCGATGACAAGGTTGTGGCTGCTATACTGAAAGCTGCTCGAAGCAAAGGAGAAGAGAGAGAGAAGGCTATAGAAGAAACAGAGAAAACATTAGAACCACTTGAGAAGGAGCTTGAAGGCAACAAGTTTTTTGGAGGAGAGAAAATTGGATTTGTGGACATTGTTGGGATTGTAGTAGCCTATTGGGTTCCTGCCATTGAAGAAGCTTTTGGATTTCAGCTGTTGACAAGTAACAATAAGTTTCCAAATTTAAGCAAATGGAGTGAAGAGATTGTGAACCACAACCTGGTCAAACAGTTTCCAGCGGCTTACGCAGTGGCTTACGGCACTCTTAGCCTCCGCCACAAGAAATTGAAACAAAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCCAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATTGTTTCCTTTATGCAAGCTAATTGGAAAGTTCGAAACTAA 1284 41.74 MGELDQVQVFGGWMSPFSRRVELGLKLKAIKYEYIEEDLKNKSHLLLKYNPIYKKVPVLIHNGNPISESIIILEYVDEVWNSVYPFFPQDLYQRAQARFWAKFIDDKVVAAILKAARSKGEEREKAIEETEKTLEPLEKELEGNKFFGGEKIGFVDIVGIVVAYWVPAIEEAFGFQLLTSNNKFPNLSKWSEEIVNHNLVKQFPAAYAVAYGTLSLRHKKLKQSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHPRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKVRN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22467445 22471701 + ClCG04G007500.2 Cla04g00746 270974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00746 427 SUPERFAMILY GST C-terminal domain-like 78 209 IPR036282 -
Cla04g00746 427 CDD GST_N_Tau 224 287 - -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE U8 224 420 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 211 291 IPR004045 -
Cla04g00746 427 Coils Coil 322 350 - -
Cla04g00746 427 CDD GST_N_Tau 7 80 - -
Cla04g00746 427 SFLD Glutathione Transferase (cytosolic) 225 422 IPR040079 -
Cla04g00746 427 SFLD Glutathione Transferase (cytosolic) 5 221 IPR040079 -
Cla04g00746 427 CDD GST_C_Tau 92 202 IPR045074 GO:0004364|GO:0006749
Cla04g00746 427 Gene3D Glutaredoxin 221 292 - -
Cla04g00746 427 Coils Coil 113 133 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 296 425 IPR010987 -
Cla04g00746 427 Pfam Glutathione S-transferase, C-terminal domain 308 401 IPR004046 -
Cla04g00746 427 Pfam Glutathione S-transferase, C-terminal domain 106 197 IPR004046 -
Cla04g00746 427 Pfam Glutathione S-transferase, N-terminal domain 225 285 IPR004045 -
Cla04g00746 427 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cla04g00746 427 Gene3D - 90 220 - -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 204 IPR045073 -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 224 420 IPR045073 -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 223 IPR010987 -
Cla04g00746 427 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cla04g00746 427 SUPERFAMILY GST C-terminal domain-like 285 424 IPR036282 -
Cla04g00746 427 Gene3D - 293 426 - -
Cla04g00746 427 SUPERFAMILY Thioredoxin-like 224 314 IPR036249 -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE U8 6 204 - -
Cla04g00746 427 SFLD Main.3: Omega- and Tau-like 5 221 IPR045073 -
Cla04g00746 427 SFLD Main.3: Omega- and Tau-like 225 422 IPR045073 -
Cla04g00746 427 CDD GST_C_Tau 297 421 IPR045074 GO:0004364|GO:0006749
Cla04g00746 427 Gene3D Glutaredoxin 4 89 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00746 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - twl:119991530 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00746 Cla-Chr4:22467445 Cla05g00387 Cla-Chr5:3515056 2.53E-45 dispersed
Cla04g00746 Cla-Chr4:22467445 Cla04g00747 Cla-Chr4:22474622 3.08E-50 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00568 . 234 442 Glutathione S-transferase Gene Family AT4G02520 57.1 7.2e-64 240.7
Cla09g00567 . 1 220 Glutathione S-transferase Gene Family AT4G02520 51.6 2.3e-54 209.1
Cla09g00566 . 47 236 Glutathione S-transferase Gene Family AT4G02520 54.5 5.2e-54 208.0
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT2G02930 57.3 2.1e-63 239.2
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT2G02930 56.5 6.5e-57 217.6
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT2G02930 52.2 2.1e-55 212.6
Cla09g00566 . 52 241 Glutathione S-transferase Gene Family AT1G02950 51.2 9.3e-50 194.1
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02930 54.8 2.5e-61 232.3
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02930 51.9 4.3e-53 204.9
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02920 55.2 2.3e-62 235.7
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT1G02920 50.2 2.3e-54 209.1
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02920 54.0 3.0e-54 208.8
Cla09g00568 . 233 448 Glutathione S-transferase Gene Family AT2G47730 57.6 1.0e-67 253.8
Cla09g00567 . 1 225 Glutathione S-transferase Gene Family AT2G47730 51.8 2.8e-57 219.2
Cla09g00566 . 50 241 Glutathione S-transferase Gene Family AT2G47730 53.5 1.8e-56 216.5
Cla09g00568 . 1 208 Glutathione S-transferase Gene Family AT3G62760 58.2 7.4e-72 267.3
Cla04g00746 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 1.4e-57 219.9
Cla05g00265 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.4e-57 219.9
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.7e-88 320.9
Cla01g00840 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.5e-67 253.1
Cla07g01008 . 102 255 Glutathione S-transferase Gene Family AT1G78380 59.9 2.3e-49 192.6
Cla07g01007 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.6e-80 294.3
Cla01g00840 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.4e-62 236.5
Cla07g01008 . 103 242 Glutathione S-transferase Gene Family AT1G78370 55.7 2.3e-41 166.0
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.5e-80 295.4
Cla01g00840 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.3e-63 237.7
Cla07g01008 . 98 242 Glutathione S-transferase Gene Family AT1G78340 56.6 1.1e-43 173.7
Cla07g01007 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.8e-61 230.7
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.4e-91 330.1
Cla01g00840 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.3e-67 251.5
Cla07g01008 . 113 242 Glutathione S-transferase Gene Family AT1G17180 63.8 1.9e-46 183.0
Cla07g01007 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.9e-75 279.3
Cla07g01007 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.2e-72 270.0
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.4e-71 264.2
Cla01g00840 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cla07g01008 . 115 243 Glutathione S-transferase Gene Family AT1G53680 58.0 1.3e-39 160.2
Cla02g00037 . 88 254 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cla05g00238 . 712 875 Glutathione S-transferase Gene Family AT2G02390 51.5 6.8e-45 177.6
Cla02g00037 . 45 257 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cla05g00238 . 669 874 Glutathione S-transferase Gene Family AT2G02380 53.1 1.4e-57 219.9
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41210 65.4 4.5e-86 314.7
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41240 63.7 6.6e-83 305.4
Cla02g01351 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.6e-80 295.0
Cla10g01965 . 392 610 Glutathione S-transferase Gene Family AT5G02780 64.4 9.2e-76 280.4
Cla02g01351 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cla10g01965 . 384 610 Glutathione S-transferase Gene Family AT5G02790 65.5 7.7e-83 303.9
Cla02g01351 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.8e-82 301.6
Cla02g01324 . 3 261 Glutathione S-transferase Gene Family AT1G19570 54.2 7.2e-72 267.3
Cla05g01223 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.5e-72 266.9
Cla02g01324 . 3 260 Glutathione S-transferase Gene Family AT1G75270 57.9 8.8e-78 287.0
Cla05g01223 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 4.1e-75 278.1
Cla05g01223 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.4e-101 366.3
Cla11g01560 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.9e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00746 Cla_Chr04 FPKM 5.778285 6.465802 0.359962 1.066253 2.170864 1.514663 1.611737 1.30307 1.852618 1.74658