Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00746 ATGGGGGAATTAGATCAAGTGCAGGTATTTGGTGGATGGATGAGTCCCTTTAGCCGTAGAGTGGAGTTGGGTTTGAAACTCAAAGCCATAAAATATGAATATATTGAGGAAGACTTGAAGAATAAGAGCCATTTGCTTCTGAAATACAATCCAATTTACAAGAAGGTTCCTGTGCTCATTCACAATGGAAACCCCATTTCAGAGTCGATTATCATCCTTGAATACGTTGATGAAGTCTGGAATTCAGTTTACCCTTTCTTCCCTCAAGATCTCTATCAAAGAGCTCAAGCAAGGTTTTGGGCTAAGTTTATCGATGACAAGGTTGTGGCTGCTATACTGAAAGCTGCTCGAAGCAAAGGAGAAGAGAGAGAGAAGGCTATAGAAGAAACAGAGAAAACATTAGAACCACTTGAGAAGGAGCTTGAAGGCAACAAGTTTTTTGGAGGAGAGAAAATTGGATTTGTGGACATTGTTGGGATTGTAGTAGCCTATTGGGTTCCTGCCATTGAAGAAGCTTTTGGATTTCAGCTGTTGACAAGTAACAATAAGTTTCCAAATTTAAGCAAATGGAGTGAAGAGATTGTGAACCACAACCTGGTCAAACAGTTTCCAGCGGCTTACGCAGTGGCTTACGGCACTCTTAGCCTCCGCCACAAGAAATTGAAACAAAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCCAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATTGTTTCCTTTATGCAAGCTAATTGGAAAGTTCGAAACTAA 1284 41.74 MGELDQVQVFGGWMSPFSRRVELGLKLKAIKYEYIEEDLKNKSHLLLKYNPIYKKVPVLIHNGNPISESIIILEYVDEVWNSVYPFFPQDLYQRAQARFWAKFIDDKVVAAILKAARSKGEEREKAIEETEKTLEPLEKELEGNKFFGGEKIGFVDIVGIVVAYWVPAIEEAFGFQLLTSNNKFPNLSKWSEEIVNHNLVKQFPAAYAVAYGTLSLRHKKLKQSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHPRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKVRN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22467445 22471701 + ClCG04G007500.2 Cla04g00746 270974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00746 427 SUPERFAMILY GST C-terminal domain-like 78 209 IPR036282 -
Cla04g00746 427 CDD GST_N_Tau 224 287 - -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE U8 224 420 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 211 291 IPR004045 -
Cla04g00746 427 Coils Coil 322 350 - -
Cla04g00746 427 CDD GST_N_Tau 7 80 - -
Cla04g00746 427 SFLD Glutathione Transferase (cytosolic) 225 422 IPR040079 -
Cla04g00746 427 SFLD Glutathione Transferase (cytosolic) 5 221 IPR040079 -
Cla04g00746 427 CDD GST_C_Tau 92 202 IPR045074 GO:0004364|GO:0006749
Cla04g00746 427 Gene3D Glutaredoxin 221 292 - -
Cla04g00746 427 Coils Coil 113 133 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 296 425 IPR010987 -
Cla04g00746 427 Pfam Glutathione S-transferase, C-terminal domain 308 401 IPR004046 -
Cla04g00746 427 Pfam Glutathione S-transferase, C-terminal domain 106 197 IPR004046 -
Cla04g00746 427 Pfam Glutathione S-transferase, N-terminal domain 225 285 IPR004045 -
Cla04g00746 427 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cla04g00746 427 Gene3D - 90 220 - -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 204 IPR045073 -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 224 420 IPR045073 -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 223 IPR010987 -
Cla04g00746 427 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cla04g00746 427 SUPERFAMILY GST C-terminal domain-like 285 424 IPR036282 -
Cla04g00746 427 Gene3D - 293 426 - -
Cla04g00746 427 SUPERFAMILY Thioredoxin-like 224 314 IPR036249 -
Cla04g00746 427 PANTHER GLUTATHIONE S-TRANSFERASE U8 6 204 - -
Cla04g00746 427 SFLD Main.3: Omega- and Tau-like 5 221 IPR045073 -
Cla04g00746 427 SFLD Main.3: Omega- and Tau-like 225 422 IPR045073 -
Cla04g00746 427 CDD GST_C_Tau 297 421 IPR045074 GO:0004364|GO:0006749
Cla04g00746 427 Gene3D Glutaredoxin 4 89 - -
Cla04g00746 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00746 Cla-Chr4:22467445 Cla05g00387 Cla-Chr5:3515056 2.53E-45 dispersed
Cla04g00746 Cla-Chr4:22467445 Cla04g00747 Cla-Chr4:22474622 3.08E-50 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00746 K00799 - twl:119991530 390.193