Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00762 ATGGCGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACTAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAATCCCTCTTTTCAACTTTATCATCATCATAATTACCCTCCTACCTCTGCCGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCGCTCCTCTCCGAACAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTACCACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCATAACTCCTCCGACAAGTTGCTGCCGGATTCCGCCCTTCTTGACACCTTGGAAGGTGATATTCCCCCCGCCGCCGATGATGGATTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTCACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCACCAACCGCCGTCTTACAATCCATATTTTCAAAGATCCATTAACAACCACGGTGCTGGATTCGTCGACCACCAACCCGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCGAGAAGTCAGGTATCCAACTGGTTCATCAATGCAAGAGTGAGACTGTGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACGATAATAACGCCTCAAACAACAACAACGACCATCTTTCATCCACAAACGAATCCTTATTGAAACCCGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAACACCCATTTCTTTCCAACCCACCACCCTCACGCCGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACGTTTCCTTGACACTCGGCCTCCACCAAAACCATGGTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCATTTTAACCTAGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1383 47.43 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHHNYPPTSAVTAAALHHHLPPLLSEQQPPLSLDLNLQHRYAYHSTLPLQASKFFKPAQQLLHDLFDYAPHNSSDKLLPDSALLDTLEGDIPPAADDGFETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQHQPPSYNPYFQRSINNHGAGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEANDNNASNNNNDHLSSTNESLLKPDGHNNNNASSSNHDHHPLDLSNTHFFPTHHPHAAAGATAIGGSGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22705788 22710147 + ClCG04G007700.1 Cla04g00762 270990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00762 460 CDD homeodomain 267 328 IPR001356 GO:0003677
Cla04g00762 460 SMART prehox3 107 232 IPR006563 -
Cla04g00762 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 437 - -
Cla04g00762 460 SUPERFAMILY Homeodomain-like 269 334 IPR009057 -
Cla04g00762 460 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677
Cla04g00762 460 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677|GO:0006355
Cla04g00762 460 Gene3D - 270 332 - -
Cla04g00762 460 MobiDBLite consensus disorder prediction 338 409 - -
Cla04g00762 460 MobiDBLite consensus disorder prediction 338 387 - -
Cla04g00762 460 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 54 437 - -
Cla04g00762 460 Pfam Associated with HOX 115 231 IPR006563 -
Cla04g00762 460 SMART HOX_1 267 331 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00762 Cla10g02042 CCT
Cla04g00762 Cla10g02042 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00762 Cla-Chr4:22705788 Cla10g01741 Cla-Chr10:33296516 1.57E-58 dispersed
Cla10g02042 Cla-Chr10:36169958 Cla04g00762 Cla-Chr4:22705788 4.81E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60909 PF07526 POX 1.70E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00762 - - csv:101221147 643.654