Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00781 ATGGAAACCCATCTTCCGCCCCTGTTCTTTCTTCTCATTTTCCTCTCATTCTTCCTCTGCTGCCCTGCCAAGCGCTGCCCAGACTGCGGCCACACGCCGGTGCCGTACCCACTCAGCACAAGCCCAGATTGCGGTGACCCTCTTTACAGAGTCCGGTGCGCCGCCCCCGAACTCTGGTTCGAGTCCGTCAATGGGTCTTTCTATTTGATCACTTCCGTTAATCCGGTGGCACAGAGGCTGATCGTCCGGCCGCCGGGGTTGGCCAAAAACACCTGCGTTTCGTCGGATTTTGGTACCAGTGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGATAGAAACACGGTTTTGCTCTACAACTGTTCGGTAGAAGTTCTCGAAAATAGTTGGAATTGTGCACCTAATAGCATCTGTCATGACTTTATCAGACAGAATCCGGTGGCAATGGCAGCGTGTAAGGTGGCGCCGACGTGCTGTTGGTACACAAGTGGCGGTTCCATGACTGCGTCTAGAATCAGGGTGCGAAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATATGGGTAGTTCTGTTCCGCCGAAGAAGTGGCCGGAACCTGGGGTCGAGATTCAATGGACACCACCCCGAGAGCCGGCATGTCGTGTGGCTACGGACTGCCGGAATTGGGTGAATTCTGCTTGTTCGCCGGACCCTGCAAACGCCGGGCAGAGGAGGTGCTTATGCAAGGTTCCTTTTAAGTGGGATCCTATAAATGGCTTGTGTAGTGGCAACAATTTGAAAATACAGAACAAGATAACTCACAAGAAGCACAAGAAGATGCCTGTTATTCTTGGAGCAATGGCGGGAGTATTTGTAATGGTGATTGGAGGTTCAATCATGTTTATAATTTCCAAAAGACGTCGACAGATTCCGAAGGGGAACGAGCTGAGTTCGAAACAAGTTCGTGAAGTGATTCTAACCGCCAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCCAAGGAGAATTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAACTTAGAAGATGGAACCTCAATAGCAGTTAAACGTGCAAAGTTGGGTAGCATGAAGGGTATTGATCAAATCCTGAACGAGGTTCGGATTCTTTGTCAGGTAAACCATCGATACCTCGTTCGTCTACTTGGATGTTGTCTCGAACTTGAGCAACCCCTCTTAATATATGAGTACATCTCGAATGGGAACCTGTTTGATCACCTTCATGGGAATACAAGTTCAAGCAAATGGCCACCGTTGACATTGAGTCGTCGACTCTGCATAGCTTGGCAAACAGCCGAGGGCCTTGCTTATCTCCACACTTCAGCCACACCAAGAATCTATCACCGAGACATAAAGTCGAGCAATATTCTACTGGACGAGAAGTTAAATGCCAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTTGACCCAGAATATTACCTTAATTTCCAATTGACAGACAAGAGTGATGTTTATAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCGGAGAAAGCCATTGATTTTAATAGGGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATAATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATTAAACAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAATATTATTTCCATTCTTAATAATGAGGTTAGAAATATTGACTAA 1914 46.39 METHLPPLFFLLIFLSFFLCCPAKRCPDCGHTPVPYPLSTSPDCGDPLYRVRCAAPELWFESVNGSFYLITSVNPVAQRLIVRPPGLAKNTCVSSDFGTSGFWLDTRLPFTISDRNTVLLYNCSVEVLENSWNCAPNSICHDFIRQNPVAMAACKVAPTCCWYTSGGSMTASRIRVRKERCSAYECFVNMGSSVPPKKWPEPGVEIQWTPPREPACRVATDCRNWVNSACSPDPANAGQRRCLCKVPFKWDPINGLCSGNNLKIQNKITHKKHKKMPVILGAMAGVFVMVIGGSIMFIISKRRRQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTSIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLCIAWQTAEGLAYLHTSATPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKQRASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNNEVRNID 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22870003 22872104 - ClCG04G007920.1 Cla04g00781 271009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00781 637 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00781 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cla04g00781 637 SMART serkin_6 346 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00781 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 25 628 - -
Cla04g00781 637 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
Cla04g00781 637 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672|GO:0006468
Cla04g00781 637 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Cla04g00781 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 628 IPR045274 GO:0007166
Cla04g00781 637 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Cla04g00781 637 CDD STKc_IRAK 352 625 - -
Cla04g00781 637 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01499 Cla-Chr2:29506697 Cla04g00781 Cla-Chr4:22870003 4.01E-41 dispersed
Cla04g00781 Cla-Chr4:22870003 Cla10g01861 Cla-Chr10:34516333 2.09E-177 dispersed
Cla03g01078 Cla-Chr3:21226667 Cla04g00781 Cla-Chr4:22870003 9.58E-78 transposed
Cla11g01863 Cla-Chr11:32150679 Cla04g00781 Cla-Chr4:22870003 2.30E-87 transposed
Cla11g00635 Cla-Chr11:7301962 Cla04g00781 Cla-Chr4:22870003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80497 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00781 - - csv:101204219 1153.27