Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00787 ATGCCAAAGCCAGACGAGGAACTTAGGATAGAGAAAAGTTATGGTGGTATCGGTAGTACTTTGTTCGAGAAAAGAATTGTTAAGAAGTCAATCAATGTCTCACATTCGCGAGATAAAGGAAAGATCATGTATACCCAACTGTTCTATCCTGGATTCAATGGATCCATCAACATATCTTTGAAAGAATCTGCCGAAATTGAAAACAATGGAGTTTTGAGGCTAACGAGCAATTCCCAAAACATCATCGGCCAGGCATTTTACGCCTCTCCAATTCAGTTCAAAAACTCCTCCTCCACCGCCGCACGCGGCGGCGGAGCTTTTTCTTTCTCCACCTGTTTTGCCTTCTGCATCATCCCCGAGAACGACGGCGGCCATGGCTTCACTTTTTCCATTGTCCCTTCTGAAGATCTCAGAGCTATTCCTCAGAGGTTTCTTGGACTCTTCAACGAAACGAACTTCTACGGCAAATCCTCAAACCATATCTTCGCTGTCGAATTTGATACTATCTACGATGTTGGGATCAAAGATCTTGATAACGATCATGTGGGGATCGATTTAAACAGCTTGATTTCGAATATCTCTGTTCACGCTGCATATTTTGACGATTTGGGTAAAGTTCATAATCTCTCACTCCAAAGTGGGAAGCCAATTAAAGTTTGGATTGATTATGATTCTGATGAAATCACTCTCCATGTTACGATTTCCCCACATTCTTCAAAACCCAGAAGTCCAATTCTGTCGTACAGAGTGGATCTTTCGTCAGTTTTGAATGAAGAAATGTACATTGGGTTTACTGCATCAACAGGCTTACTTTCTAGAAGCTCGCAGTACATTCTGGGGTGGAGTTTCGCCATTAATGGCCGAGCTCGAGATCTTGATCTCTATTCGCTTCCATTACCAAAAAAGAAGAAAACAGGGGAGAAAATCAGTCTTCCTGTTTATGTGTCTATAACAACAGTGAGTATTTTTGTGATCTCTGTTTTCGCTTTAGGTTTTTATCTCGTACGAAAGTACAAGAAATCCGACGAAATCGAGCCGTGGGAGCTTCAAATAGGACCCCATCGATATTCCTACAGAGAACTAAAAAAGGCTACAAGAAATTTCAGCGAGAAGGAGGTTCTTGGGTATGGCGGATCTGGGAAAGTATACAGAGGAATCCTTCCGATTTCGAAAACCCAAATCGCCGTTAAGCGAATTTCTCGCGATTCTAAACAGGGTCTCCGTGAATTCGTGACGGAAATCGCCACAATCGGAATGCTCCGTCATCGAAATCTGGTTCAGTTGCTTGGATGGTGTCGGCGGCAGGAAGATCTGCTTCTGGTTTACGAATTTATGGGGAATGGGAGCTTAGATAATTACCTATTCGATGATCCAAGAACAATTCTGAATTGGGAACAGAGATTCAAAGTAATAAAGGGGGTTGCCTCTGCTTTGCTTTATCTTCACGAGGGGTATAAACAGGTGGTGATTCACAGAGACGTGAAGGCCAGCAATGTGTTATTAGACGACGAATTGAACGGAAGATTGGCGGATTTCGGGCTAGCGAAGGTGTACGAACACGGATCGGCTCCGGATACGACTCGGGTGGTTGGAACTTTGGGGTATTTGGCGCCGGAGTTGTCGAGAACGGGGAAATCGACGACGTGCTCAGACGTATATGCGTTCGGGGCTCTGATGTTGGAAGTGGCTTGTGGGCGGCGGCCGGTGGAGGTGAAGGCGTTGCCGGAGGAGATGACGTTGGTGGATTGGGTTTGGGATAAATACAGAGAAGGGCAGCTTTTGACCGTCGTGGATCCGAAGCTCCGGGGAGTTTATGACGAAGTTGAGGTGGCGATGGTGTTGAAATTGGGGGTTATGTGTTCGAATAATGAGCCAAAGCAACGGCCGAGTATGAGGCAAGTTGTGCGGTGTTTGGACGGAGAAATTGGTGTCGCCGACGAGTGGAAGGCGCCCAGTGGCGGAAGTAATGGCGGGGCGGTGGGGGATTTTCTTGGGTGTTTAACGTCAACGTCGATTAGTGGAGAAAGCTCATGTTAA 2037 45.9 MPKPDEELRIEKSYGGIGSTLFEKRIVKKSINVSHSRDKGKIMYTQLFYPGFNGSINISLKESAEIENNGVLRLTSNSQNIIGQAFYASPIQFKNSSSTAARGGGAFSFSTCFAFCIIPENDGGHGFTFSIVPSEDLRAIPQRFLGLFNETNFYGKSSNHIFAVEFDTIYDVGIKDLDNDHVGIDLNSLISNISVHAAYFDDLGKVHNLSLQSGKPIKVWIDYDSDEITLHVTISPHSSKPRSPILSYRVDLSSVLNEEMYIGFTASTGLLSRSSQYILGWSFAINGRARDLDLYSLPLPKKKKTGEKISLPVYVSITTVSIFVISVFALGFYLVRKYKKSDEIEPWELQIGPHRYSYRELKKATRNFSEKEVLGYGGSGKVYRGILPISKTQIAVKRISRDSKQGLREFVTEIATIGMLRHRNLVQLLGWCRRQEDLLLVYEFMGNGSLDNYLFDDPRTILNWEQRFKVIKGVASALLYLHEGYKQVVIHRDVKASNVLLDDELNGRLADFGLAKVYEHGSAPDTTRVVGTLGYLAPELSRTGKSTTCSDVYAFGALMLEVACGRRPVEVKALPEEMTLVDWVWDKYREGQLLTVVDPKLRGVYDEVEVAMVLKLGVMCSNNEPKQRPSMRQVVRCLDGEIGVADEWKAPSGGSNGGAVGDFLGCLTSTSISGESSC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22939201 22942188 - ClCG04G008010.1 Cla04g00787 271015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00787 678 Gene3D - 45 294 - -
Cla04g00787 678 CDD lectin_legume_LecRK_Arcelin_ConA 45 287 IPR001220 GO:0030246
Cla04g00787 678 CDD STKc_IRAK 374 640 - -
Cla04g00787 678 ProSiteProfiles Protein kinase domain profile. 368 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00787 678 SMART serkin_6 368 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00787 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 49 652 - -
Cla04g00787 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 300 IPR013320 -
Cla04g00787 678 Pfam Legume lectin domain 47 293 IPR001220 GO:0030246
Cla04g00787 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Cla04g00787 678 Gene3D Phosphorylase Kinase; domain 1 353 444 - -
Cla04g00787 678 ProSitePatterns Protein kinases ATP-binding region signature. 374 397 IPR017441 GO:0005524
Cla04g00787 678 Gene3D Transferase(Phosphotransferase) domain 1 445 649 - -
Cla04g00787 678 SUPERFAMILY Protein kinase-like (PK-like) 350 636 IPR011009 -
Cla04g00787 678 Pfam Protein tyrosine and serine/threonine kinase 371 638 IPR001245 GO:0004672|GO:0006468
Cla04g00787 678 PANTHER - 49 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00787 Cla-Chr4:22939201 Cla10g02025 Cla-Chr10:36020308 0 dispersed
Cla04g00787 Cla-Chr4:22939201 Cla04g00789 Cla-Chr4:22957023 0 proximal
Cla04g00786 Cla-Chr4:22933749 Cla04g00787 Cla-Chr4:22939201 2.05E-69 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80499 PF07714 PK_Tyr_Ser-Thr 6.90E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00787 - - bhj:120073983 1126.31