Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00789 ATGGCGGCGATCTTCTTCCTCATCTTAATTCTTTTGATTTTCATTTCTCTAGCTTCTGGAGATCAAAGCTTCATCTTCAATGGCTTCAGCTCCGGCGATCTCATCCTCGACGGCGTCGCCGAAGTAACCTCCAATGGCCTTTTGAAGCTCACCAACACGTACGACCAACAAATTGGCCACGCCTTTTACCTCAATTCCATTTCCTTCAAATCCCCATCAAACAATTCCTCAATTTCCTCCTTCTCTGCAACTTTCGTCTTCGCCATAATCTCAGAGTACGACGATCTTGGCGGCCATGGAATCGCCTTCGTCGTTTCTCCGACGAGGGGTCTCCCCGGAGCTCGGCCGAGCGAAAACCTCGGTCTATTCAACGAATCCAACAACGGGAACGAAGCGAATCACATCTTCGCCGTTGAAATCGACACGATTCAGAATCTTGATCTTAAAGACATCAACAAGAATCATGTCGGAATCAACATTAACGGACTGGTATCGGAGCGGGCGGAGCGAGCAGGGTATTGGGTCGACGGAAAATTCAGGAATTTGACGTTAATCAGTGGTGAACCGATGCAACTTTGGGTTGAATACGACGGTTTTGAAAAGCAAATCAACGTTACTCTGTCTCCAATTGAAATCATAGATAAACCCAAAATTCCCCTTTTATCTTACCGGCGAGACTTATCGTCGGTCATCAACGACATCATGTACATCGGATTCTCTTCATCGACAGGCTCCATTACGACGTTGCATTACATTTTAGGTTGGAGCTTCAGCGTCAATGGCGAAGCGCAGAGGCTTAATCTGTCTCAACTCCCCAAGCTTCCATCTCGGCCGGGAAAAAAACAGAGACGATCTAAATTCTTGACAGTGGGATTACCGTTGATTTCTGTTTCATTAGCTTCAATGACAGTTCTGGGGGTAATTTATTTCATTCACCGGAGACGGAAATTCGCAGAGATTTTAGAGGATTGGGAGCTGGAATACGGACCCCAGAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTCAGAGAAAAGGAATTTCTGGGATTTGGTGGATTCGGAAGAGTTTACAAAGGGGTTTTACCAAATTCAAAAATCGAAGTAGCAGTGAAGAAAATCTCTCACGAATCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGCGGCTCCGGCACAGGAACTTGGTGACGCTGTTGGGGTATTGTCGGCGGAAAGGGGAGCTGTTTTTGGTGTACGATTACATGAGGAATGGAAGCTTGGATACGTATTTACATGAGTTGCCGGAAATTACGATAAATTGGGAACAGAGATTTGAGATAATAAAAGGAGTGGCGTCGGGGCTGTTTTATCTTCATGAACAGTGCGAGAAAGTGGTGATTCATAGAGATGTGAAGGCGAGTAATGTGTTGCTTGATGATGAATTCAATGGCCGATTGGGGGATTTCGGTTTGGCAAAAATGTATGAGCGTGGCGCCGATCCTCGAACCACTCACGTCGTCGGAACTCTTGGGTATTTAGCGCCAGAGCACATAAGAACAGGGAGAGCCACAACAAGAACAGACGTATACGCATTTGGGGCATTTCTTCTAGAAGTGGCCTGTGGAAGAAGGCCAATTCATCCTCAAGAAGACGCCGACGATTTCATTTTAATGGATTGGGTTTTCTCTTGTTGGACAAACGGCCAAATTCTCCGAACCGCCGATCCCAAATTGGGAGGTAATTTCGAACCTTCTCAGCTCGAATTGGTTCTCAAACTTGGCTTGCTCTGCTCTCACTACTCCCCCGCCGTTCGCCCCACCATGCACCAGGTTCTGCAGTATTTGCAGGCCGATGCGCCGCTGCCGGACCTCGCCTCGCTCCGGTGGCGCCTCTCCGGAAGTGGGTTTTTCAACTTCAGACCTCGCGACGGCGATGGCGATAGTGATGGGTTGGATGATTTTACGATGTCTTGTCCGTTATCGACGGGAAGGAATGTGACGAGTTCGTCGTCGGTTGCGGAGTCTATTCTGTCGGAAGGCCGCTGA 2046 47.75 MAAIFFLILILLIFISLASGDQSFIFNGFSSGDLILDGVAEVTSNGLLKLTNTYDQQIGHAFYLNSISFKSPSNNSSISSFSATFVFAIISEYDDLGGHGIAFVVSPTRGLPGARPSENLGLFNESNNGNEANHIFAVEIDTIQNLDLKDINKNHVGININGLVSERAERAGYWVDGKFRNLTLISGEPMQLWVEYDGFEKQINVTLSPIEIIDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTLHYILGWSFSVNGEAQRLNLSQLPKLPSRPGKKQRRSKFLTVGLPLISVSLASMTVLGVIYFIHRRRKFAEILEDWELEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKKISHESRQGMKEFVAEIVSVGRLRHRNLVTLLGYCRRKGELFLVYDYMRNGSLDTYLHELPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYERGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHPQEDADDFILMDWVFSCWTNGQILRTADPKLGGNFEPSQLELVLKLGLLCSHYSPAVRPTMHQVLQYLQADAPLPDLASLRWRLSGSGFFNFRPRDGDGDSDGLDDFTMSCPLSTGRNVTSSSSVAESILSEGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22957023 22962427 + ClCG04G008020.1 Cla04g00789 271017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00789 681 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Cla04g00789 681 MobiDBLite consensus disorder prediction 658 681 - -
Cla04g00789 681 PANTHER - 7 654 - -
Cla04g00789 681 Gene3D - 21 272 - -
Cla04g00789 681 Pfam Protein kinase domain 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00789 681 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00789 681 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246
Cla04g00789 681 Gene3D Transferase(Phosphotransferase) domain 1 422 627 - -
Cla04g00789 681 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246
Cla04g00789 681 CDD STKc_IRAK 351 616 - -
Cla04g00789 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
Cla04g00789 681 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cla04g00789 681 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524
Cla04g00789 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 7 654 - -
Cla04g00789 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cla04g00789 681 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00789 Cla10g02025 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00786 Cla-Chr4:22933749 Cla04g00789 Cla-Chr4:22957023 1.30E-57 dispersed
Cla04g00789 Cla-Chr4:22957023 Cla10g02025 Cla-Chr10:36020308 0 dispersed
Cla10g02115 Cla-Chr10:36830202 Cla04g00789 Cla-Chr4:22957023 6.74E-18 dispersed
Cla04g00787 Cla-Chr4:22939201 Cla04g00789 Cla-Chr4:22957023 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80500 PF00069 Pkinase 6.60E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00789 - - csv:101205439 1153.27