Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00803 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACTATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATGAGCATGAGCCGTAACTGGGGACAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGA 786 53.56 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23068149 23070136 + ClCG04G008140.1 Cla04g00803 271031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00803 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Cla04g00803 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Cla04g00803 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cla04g00803 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Cla04g00803 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Cla04g00803 261 PANTHER EXPANSIN-A15 8 260 IPR002963 GO:0009664
Cla04g00803 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cla04g00803 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Cla04g00803 261 PANTHER EXPANSIN 8 260 - -
Cla04g00803 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cla04g00803 261 SMART dpbb_1 70 157 IPR007112 -
Cla04g00803 261 Gene3D - 167 259 IPR036749 -
Cla04g00803 261 Gene3D - 23 163 IPR036908 -
Cla04g00803 261 Pfam Lytic transglycolase 70 157 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00803 Cla-Chr4:23068149 Cla07g00480 Cla-Chr7:6785317 1.79E-128 dispersed
Cla04g00937 Cla-Chr4:24382578 Cla04g00803 Cla-Chr4:23068149 1.48E-105 dispersed
Cla07g00704 Cla-Chr7:18775024 Cla04g00803 Cla-Chr4:23068149 7.70E-78 dispersed
Cla10g00327 Cla-Chr10:4236919 Cla04g00803 Cla-Chr4:23068149 4.93E-83 dispersed
Cla02g01959 Cla-Chr2:34678805 Cla04g00803 Cla-Chr4:23068149 1.77E-168 wgd
Cla03g00138 Cla-Chr3:1443303 Cla04g00803 Cla-Chr4:23068149 5.36E-170 wgd
Cla04g00803 Cla-Chr4:23068149 Cla07g00313 Cla-Chr7:3591610 3.32E-166 wgd
Cla04g00803 Cla-Chr4:23068149 Cla09g01916 Cla-Chr9:36830486 1.79E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00803 - - csv:101212872 515.768