Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00806 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATTTCCCGCCGTTATGATCCCGCCGACATTATCTCCGACCCACACGACGGGGGTTTCGGTCATTCCTTTTACTACCTCCCACCCGAACCACATACCCTCTCCTCCTCCAAAGATTTCTCCGACGACTACATCTCTCCGGCGACCATTTTCCGGTCTATTTCCGGCGCCTCTGTGAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACGACGTTTGATCGGGCCGCAGCTTTCGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCAGTCGGTGTCGGGAAATTCCGGCGGATTCCCTTCTTCGGGTCCACTGGAGAGAGGGTTTTTATCTGGACCTTTGGCCGCCAGGACCTTCGAATCGGGTCCGATTGATCGAGTGGTTTATTCCGGTCCGATTGAGAAGGGTGGTGGACCCGAGAAATTGCAAAGGAACGTCTCTCATGGCGGCGTCGGAGACAGAGAACCGAAATCGAAAAGAAGCAGAAGAAGAAGAAGTCTTATTCGGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCAGCGACTAAGAGAGTGAGAGAATCGGAATCGTACAAGCATAATGAAAATGCTGCAGCTTCTGCAGCTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCTCAGGAAGACGACGGCGATTATTTTCTCGGCGGTCAGAGCGTGCAGTGGGCGCAGGGGAAAGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAATGGTTGGGTTTTCGTCGGAATTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTTGCTAATCTCTACACTGCCGTTCTTAAAGAACTCAAGGGTTTGATTTGGAGTGATAAGTTTGATTCGACTGCAACTTCATCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACTCACATGAAAAATCAGGAGAATGATCATCAATCGACAGAGAACTTCTCAGCACAAAATGGGGTTGTGAATTTGGAGGCTGATTCAGTGAGGACAAGAGAGAGAGTTTATAATACGAACTATAGGACGAGTCAGCTGATGAAGAAGGCTGATCAGAATCCAAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGGAAGTTGAACAATAGACAATTAGATCACCACCAAATATGGGATGAATCAACAGCAATCAATCATTCCGAGGTGTTGAATGCTCTGTCTCAAGCTTTGAGAAAAACAGAGGAAGCATATCTGCAGAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTTATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGCGCAATTGTAGCACAGCAATTTGAACCGGATTTCGGGACTGGAAAGCCATACAGAGACTTAGAGAGAATCAACGAAGGAACACTACGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAGATTAAAAGCCTTGGCTTCCCATCAGCTTACGATGGACCACAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGATGACGCTTCCGCAATTATGAATGACAGGGTAAAAGGTTATTTGAAGATCACGCGGGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACAGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACATTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGACCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCACGATGACGTTTCGAACATAATGAGATATAAACTTAATACACCCCTTCACTTTCTCCCCACCCCACCACACATTCCAATATTGGAGAAGGCTCCTGAGAAATTTGGAAGTTCTTGTCTTTACTGGAGTGGAGATGATCCAGTTCAAATATTGAATAGGTTTGTGATCCGAAAATTCCAGTCAATATTTAGATGGAAAACTGACGCCAGCTCAATTAGTCAACCAAGACAGACAGACTCGTCTCCCTTCAACAGGAGCAGAAAGGCAGGGAGAACATCAGATCTTGTAGGATTGCATGGAAAAGGGCAGTCAATTAGCTTCACTGAATTTCGTTTGAAGTACCAATCACCCACGGCCTCTGCTATAGTCTGCTCTTGA 2490 46.47 MGNRIGKIGHCFAGAGDISRRYDPADIISDPHDGGFGHSFYYLPPEPHTLSSSKDFSDDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRQSVSGNSGGFPSSGPLERGFLSGPLAARTFESGPIDRVVYSGPIEKGGGPEKLQRNVSHGGVGDREPKSKRSRRRRSLIRILKRAISKTISRNQKAATKRVRESESYKHNENAAASAAQTQSSVHLSSHASLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWSDKFDSTATSSSMNSSNSASIEEDDHGTTHMKNQENDHQSTENFSAQNGVVNLEADSVRTRERVYNTNYRTSQLMKKADQNPKNWKCEWERERLGLEGKLNNRQLDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGTLRVFESSNGVEFERLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYITNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSNIMRYKLNTPLHFLPTPPHIPILEKAPEKFGSSCLYWSGDDPVQILNRFVIRKFQSIFRWKTDASSISQPRQTDSSPFNRSRKAGRTSDLVGLHGKGQSISFTEFRLKYQSPTASAIVCS 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23116963 23124723 + ClCG04G008170.2 Cla04g00806 271034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00806 829 Pfam Protein phosphatase 2C 425 687 IPR001932 -
Cla04g00806 829 MobiDBLite consensus disorder prediction 346 360 - -
Cla04g00806 829 MobiDBLite consensus disorder prediction 776 792 - -
Cla04g00806 829 SMART PP2C_4 249 713 IPR001932 -
Cla04g00806 829 ProSiteProfiles PPM-type phosphatase domain profile. 260 715 IPR001932 -
Cla04g00806 829 SUPERFAMILY PP2C-like 271 709 IPR036457 -
Cla04g00806 829 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 712 - -
Cla04g00806 829 Gene3D - 228 715 IPR036457 -
Cla04g00806 829 MobiDBLite consensus disorder prediction 209 248 - -
Cla04g00806 829 MobiDBLite consensus disorder prediction 776 799 - -
Cla04g00806 829 MobiDBLite consensus disorder prediction 330 374 - -
Cla04g00806 829 CDD PP2Cc 434 711 IPR001932 -
Cla04g00806 829 MobiDBLite consensus disorder prediction 160 195 - -
Cla04g00806 829 PANTHER PROTEIN PHOSPHATASE 2C 20 712 IPR015655 GO:0004722|GO:0006470
Cla04g00806 829 MobiDBLite consensus disorder prediction 229 248 - -
Cla04g00806 829 MobiDBLite consensus disorder prediction 330 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00806 Cla-Chr4:23116963 Cla10g00177 Cla-Chr10:1883487 2.72E-36 dispersed
Cla05g00646 Cla-Chr5:6027129 Cla04g00806 Cla-Chr4:23116963 2.80E-71 transposed
Cla02g01969 Cla-Chr2:34757872 Cla04g00806 Cla-Chr4:23116963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00806 - - bhj:120069881 1321.61