Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00809 ATGTGGACCGTAGATCCAGTACTTATAACTAGATTTAGTGCTAGGGAAAATGTCACAGAGGAGGAAGTCAATAAATCAAAGTCAGCCAACTCAGTAGCCAAATCATCAACACGTCATCAAGCCAGACAATATAAAAGATGGCTGAGAACGAGGATATCCAACCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTTGGAATGGGACAAAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAACGAACTTCGTGTCGCTCCGGAAGAGCATCCAGTTCTTCTCACTGAGGCACCCCTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGACGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGAGTGATAGCTGGACTTTTTGTCAATCATTCAGTTATCCCTTGTGAGCCATTTGGTGCCAAAAATATGCTGGTCAATGCATTTGGCTACATGGAATAA 1239 46.0 MWTVDPVLITRFSARENVTEEEVNKSKSANSVAKSSTRHQARQYKRWLRTRISNLSSVIMEQEWLRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGVIAGLFVNHSVIPCEPFGAKNMLVNAFGYME 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23142506 23146263 - ClCG04G008200.2 Cla04g00809 271037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00809 412 Pfam Actin 66 383 IPR004000 -
Cla04g00809 412 Gene3D - 65 384 - -
Cla04g00809 412 PRINTS Actin signature 64 73 IPR004000 -
Cla04g00809 412 PRINTS Actin signature 87 98 IPR004000 -
Cla04g00809 412 PRINTS Actin signature 153 166 IPR004000 -
Cla04g00809 412 PRINTS Actin signature 178 197 IPR004000 -
Cla04g00809 412 PRINTS Actin signature 99 121 IPR004000 -
Cla04g00809 412 PRINTS Actin signature 274 290 IPR004000 -
Cla04g00809 412 SUPERFAMILY Actin-like ATPase domain 185 385 IPR043129 -
Cla04g00809 412 Gene3D Actin; Chain A, domain 4 218 309 - -
Cla04g00809 412 SMART actin_3 55 393 IPR004000 -
Cla04g00809 412 CDD NBD_sugar-kinase_HSP70_actin 112 219 - -
Cla04g00809 412 PANTHER ACTIN-4 65 384 - -
Cla04g00809 412 ProSitePatterns Actins and actin-related proteins signature. 142 154 IPR020902 -
Cla04g00809 412 Gene3D - 176 376 - -
Cla04g00809 412 PANTHER ACTIN 65 384 IPR004000 -
Cla04g00809 412 SUPERFAMILY Actin-like ATPase domain 63 191 IPR043129 -
Cla04g00809 412 ProSitePatterns Actins signature 1. 91 101 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00809 Cla-Chr4:23142506 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla06g01479 Cla-Chr6:28340784 Cla04g00809 Cla-Chr4:23142506 3.60E-45 transposed
Cla02g01971 Cla-Chr2:34771151 Cla04g00809 Cla-Chr4:23142506 0 wgd
Cla04g00809 Cla-Chr4:23142506 Cla09g01925 Cla-Chr9:36902101 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00809 K10355 - csv:101214246 627.091