Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g00818 | ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTTGGAAATGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTTAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA | 813 | 47.36 | MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23231374 | 23232890 | - | ClCG04G008280.1 | Cla04g00818 | 271046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g00818 | 270 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
| Cla04g00818 | 270 | MobiDBLite | consensus disorder prediction | 110 | 141 | - | - | |
| Cla04g00818 | 270 | MobiDBLite | consensus disorder prediction | 123 | 141 | - | - | |
| Cla04g00818 | 270 | ProSiteProfiles | Zinc finger Dof-type profile. | 65 | 119 | IPR003851 | GO:0003677|GO:0006355 | |
| Cla04g00818 | 270 | MobiDBLite | consensus disorder prediction | 22 | 45 | - | - | |
| Cla04g00818 | 270 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 24 | 269 | IPR045174 | GO:0003700|GO:0006355 | |
| Cla04g00818 | 270 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 24 | 269 | - | - | |
| Cla04g00818 | 270 | Pfam | Dof domain, zinc finger | 64 | 119 | IPR003851 | GO:0003677|GO:0006355 | |
| Cla04g00818 | 270 | ProSitePatterns | Zinc finger Dof-type signature. | 67 | 103 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00818 | Cla10g02000 | CCT | |
| Cla04g00818 | Cla10g02000 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00818 | Cla-Chr4:23231374 | Cla07g01328 | Cla-Chr7:30502600 | 3.64E-33 | dispersed | |
| Cla10g02000 | Cla-Chr10:35845261 | Cla04g00818 | Cla-Chr4:23231374 | 1.44E-49 | wgd | |
| Cla02g01976 | Cla-Chr2:34830258 | Cla04g00818 | Cla-Chr4:23231374 | 1.85E-43 | wgd | |
| Cla03g00153 | Cla-Chr3:1596413 | Cla04g00818 | Cla-Chr4:23231374 | 4.92E-46 | wgd | |
| Cla04g00818 | Cla-Chr4:23231374 | Cla07g00304 | Cla-Chr7:3441324 | 4.88E-48 | wgd | |
| Cla04g00818 | Cla-Chr4:23231374 | Cla09g01940 | Cla-Chr9:36993735 | 4.56E-41 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60912 | PF02701 | zf-Dof | 3.50E-31 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g00818 | - | - | csv:101207098 | 457.988 |