Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00826 ATGAACATGAACATGAATATGAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTTTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTCACTCGCTTCCTCGCCCTCCTCCTCAAGCCTCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGTTTACTGTTTTTCCTCTTCCTCGTTGGACTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGTTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTATTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGTTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGTTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACCCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTTGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGTTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGGCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGGATGGGATGGAGGGTAGTAATGTCATTTTCCGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCAGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGGAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGCCTTTGTCAACTGATGGAGCTTTAATTGATCATGTATAA 2565 52.36 MNMNMNMSSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRLFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAAAAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTDGMEGSNVIFRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPVLKIAQSNKNEQPLSTDGALIDHV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23311043 23316465 + ClCG04G008360.2 Cla04g00826 271054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00826 854 Gene3D - 30 438 IPR038770 -
Cla04g00826 854 Pfam Sodium/hydrogen exchanger family 37 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla04g00826 854 Gene3D - 464 797 - -
Cla04g00826 854 PANTHER CATION/H + ANTIPORTER 5 835 - -
Cla04g00826 854 PANTHER BNAC06G14930D PROTEIN 5 835 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00826 - - - cmo:103490056 1496.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00826 Cla-Chr4:23311043 Cla07g00713 Cla-Chr7:19684651 0 dispersed
Cla04g00826 Cla-Chr4:23311043 Cla07g00447 Cla-Chr7:6063378 3.33E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla09g00367 . 108 838 Antiporter Super Family AT3G52080 54.3 1.0e-227 786.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00826 Cla_Chr04 FPKM 5.849153 7.24774 1.549946 1.694427 16.854 15.849798 20.163105 0.0 0.0 0.0