Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00834 ATGAAGAATCAAAGCATTATCCAATTCTCCCACGTAATGGAATCTGTATTTCATTGCTCATCTTCCACCAACAATCTGTTTCTCTCTCAGCTTCAGCTTCAACATCCTTTTAGCAGGATGAATCCCCAAATTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTAGTGTTCTTGCAGTTTGGTCTTGCAGGAATGGACATTCTGTCTAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTAGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGCCTGTGATTGACCAAAACCTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATTACCTTTGTAATGGCTTGGATCCTCAGGCTTGAGAAGGTAAGAATCAAAAGCATCAGAAGCCAAGCTAAGATAGTAGGAACCATAGCAACAGTTGGAGGAGCCATGATGATGACACTAATAAAAGGTCCAATTTTGGAGCTATTTTGGGTTAAAGAAAGAGCAAACAATCAACAACAAAGAGGTGAAATCAGCCTTCAACATACAATCAAAGGTTCAATTATGATAACAATTGGCTGCTTCAGTTGGGCCTGTTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCTGAGCTTTCCCTTACGGCTTGGATCTGCCTGCTGGGAACTGCGGAAGGCACTGTTTTGGCTTTGGTAATGGAAAGAGGAAACGCCGCCGTTTGGTCCATTACTTGGGGAACTAAATTGCTCGCCGCTGTCTATAGTGGGATATTTTGCTCAGGACTTGCTTATTACATTCAAGGACTAGTAATGAAAGACAAAGGACCTGTATTTGTGACTGCCTTTAGCCCATTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTAGGCGAACGTCTTTACTTTGGAAGGATAGTTGGAGCTGGTGTGATAATTGTGGGACTATACCTTGTTGTTTGGGGCAAAAACAAAGATGGGAATTGTTCCTCAAGTAGTGAAGACTTGAAATTGCCCACACAACAAACAAAAGAAATGGAAGACAACAAGATGGAAAGTTTAACAATTGAAGCAACTAATTCAGTTGATCTAAAGAATAATATTGAGCAAAAATAA 1188 40.82 MKNQSIIQFSHVMESVFHCSSSTNNLFLSQLQLQHPFSRMNPQISQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKSIRSQAKIVGTIATVGGAMMMTLIKGPILELFWVKERANNQQQRGEISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRIVGAGVIIVGLYLVVWGKNKDGNCSSSSEDLKLPTQQTKEMEDNKMESLTIEATNSVDLKNNIEQK 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23381317 23389483 + ClCG04G008440.2 Cla04g00834 271062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00834 395 PANTHER WAT1-RELATED PROTEIN 105 370 - -
Cla04g00834 395 PANTHER WAT1-RELATED PROTEIN 105 370 IPR030184 GO:0016021|GO:0022857
Cla04g00834 395 Pfam EamA-like transporter family 205 344 IPR000620 GO:0016020|GO:0016021
Cla04g00834 395 PANTHER WAT1-RELATED PROTEIN 47 104 IPR030184 GO:0016021|GO:0022857
Cla04g00834 395 PANTHER WAT1-RELATED PROTEIN 47 104 - -
Cla04g00834 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 87 173 - -
Cla04g00834 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00834 Cla-Chr4:23381317 Cla07g00296 Cla-Chr7:3322165 9.84E-132 dispersed
Cla09g01960 Cla-Chr9:37193819 Cla04g00834 Cla-Chr4:23381317 1.03E-92 dispersed
Cla04g00834 Cla-Chr4:23381317 Cla07g00295 Cla-Chr7:3279749 8.57E-110 wgd
Cla04g00834 Cla-Chr4:23381317 Cla09g01959 Cla-Chr9:37161261 1.11E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00834 - - csv:101217902 627.861