Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00845 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAAGATGGCGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGATCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTATCATCGTACAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG 1134 45.33 MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSKMASLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23469011 23473423 - ClCG04G008560.1 Cla04g00845 271073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00845 377 MobiDBLite consensus disorder prediction 14 45 - -
Cla04g00845 377 PANTHER PECTATE LYASE 44 370 - -
Cla04g00845 377 Gene3D - 50 358 IPR012334 -
Cla04g00845 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270
Cla04g00845 377 PANTHER PECTATE LYASE 18-RELATED 44 370 IPR045032 GO:0030570
Cla04g00845 377 Pfam Pectate lyase 121 283 IPR002022 -
Cla04g00845 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Cla04g00845 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Cla04g00845 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cla04g00845 377 SMART amb_all 77 290 IPR002022 -
Cla04g00845 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
Cla04g00845 377 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00845 Cla-Chr4:23469011 Cla01g02123 Cla-Chr1:35485956 3.98E-50 dispersed
Cla04g00845 Cla-Chr4:23469011 Cla05g02174 Cla-Chr5:33325321 2.15E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00845 K01728 - csv:101219724 712.22