Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00845 | ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAAGATGGCGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGATCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTATCATCGTACAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG | 1134 | 45.33 | MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSKMASLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23469011 | 23473423 | - | ClCG04G008560.1 | Cla04g00845 | 271073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00845 | 377 | MobiDBLite | consensus disorder prediction | 14 | 45 | - | - | |
Cla04g00845 | 377 | PANTHER | PECTATE LYASE | 44 | 370 | - | - | |
Cla04g00845 | 377 | Gene3D | - | 50 | 358 | IPR012334 | - | |
Cla04g00845 | 377 | ProSiteProfiles | Zinc finger integrase-type profile. | 324 | 365 | IPR003308 | GO:0008270 | |
Cla04g00845 | 377 | PANTHER | PECTATE LYASE 18-RELATED | 44 | 370 | IPR045032 | GO:0030570 | |
Cla04g00845 | 377 | Pfam | Pectate lyase | 121 | 283 | IPR002022 | - | |
Cla04g00845 | 377 | PRINTS | Pollen allergen Amb family signature | 65 | 82 | IPR018082 | - | |
Cla04g00845 | 377 | PRINTS | Pollen allergen Amb family signature | 120 | 136 | IPR018082 | - | |
Cla04g00845 | 377 | PRINTS | Pollen allergen Amb family signature | 267 | 286 | IPR018082 | - | |
Cla04g00845 | 377 | SMART | amb_all | 77 | 290 | IPR002022 | - | |
Cla04g00845 | 377 | SUPERFAMILY | Pectin lyase-like | 65 | 372 | IPR011050 | - | |
Cla04g00845 | 377 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00845 | Cla-Chr4:23469011 | Cla01g02123 | Cla-Chr1:35485956 | 3.98E-50 | dispersed | |
Cla04g00845 | Cla-Chr4:23469011 | Cla05g02174 | Cla-Chr5:33325321 | 2.15E-49 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00845 | K01728 | - | csv:101219724 | 712.22 |