Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00859 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGATTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTCTCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAATCGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTCTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACGTTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGAAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATGTCAATAATGTCACAACTACAACAATGCAAACTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGTGAAAACACGAGCAATGCAGGAGATGGCTAA 2340 43.21 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCFSGIGLLCKIMNHKSRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDVKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTENAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADVNNVTTTTMQTQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23598226 23606957 - ClCG04G008730.1 Cla04g00859 271087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00859 779 MobiDBLite consensus disorder prediction 668 692 - -
Cla04g00859 779 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Cla04g00859 779 MobiDBLite consensus disorder prediction 762 779 - -
Cla04g00859 779 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cla04g00859 779 MobiDBLite consensus disorder prediction 213 295 - -
Cla04g00859 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 755 IPR045279 GO:0009736
Cla04g00859 779 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Cla04g00859 779 Gene3D - 88 336 - -
Cla04g00859 779 ProSiteProfiles CCT domain profile. 725 767 IPR010402 GO:0005515
Cla04g00859 779 MobiDBLite consensus disorder prediction 1 55 - -
Cla04g00859 779 Pfam CCT motif 725 767 IPR010402 GO:0005515
Cla04g00859 779 MobiDBLite consensus disorder prediction 18 34 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 261 276 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 459 541 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 213 230 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 474 541 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 735 750 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 700 727 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 1 17 - -
Cla04g00859 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 755 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 668 779 - -
Cla04g00859 779 CDD psREC_PRR 91 194 - -
Cla04g00859 779 SMART REC_2 89 204 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00859 K12129 PRR7; pseudo-response regulator 7 - csv:101210765 1352.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00008 Cla-Chr1:70052 Cla04g00859 Cla-Chr4:23598226 2.85E-18 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla04g01184 Cla-Chr4:27017923 1.41E-18 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla04g00859 Cla-Chr4:23598226 3.57E-10 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla06g01213 Cla-Chr6:25304932 1.04E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G59940 59.9 2.5e-44 176.4
Cla01g00731 . 5 152 Response Regulator Gene Family AT1G59940 58.8 1.7e-40 163.7
Cla04g00444 CCT 11 154 Response Regulator Gene Family AT1G59940 56.3 9.4e-39 157.9
Cla07g00490 . 18 153 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Cla10g01535 CCT 8 162 Response Regulator Gene Family AT1G59940 53.5 5.1e-37 152.1
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G10470 61.1 1.6e-43 173.3
Cla01g00731 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.1e-39 160.6
Cla04g00444 CCT 17 168 Response Regulator Gene Family AT1G10470 56.9 1.2e-38 157.1
Cla10g01535 CCT 10 170 Response Regulator Gene Family AT1G10470 53.4 7.9e-38 154.5
Cla07g00490 . 23 153 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 28 182 Response Regulator Gene Family AT5G62920 67.1 1.4e-47 186.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT5G62920 61.0 1.7e-40 162.9
Cla04g00444 CCT 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cla10g01535 CCT 10 164 Response Regulator Gene Family AT5G62920 52.9 5.1e-37 151.4
Cla06g01631 . 29 198 Response Regulator Gene Family AT1G19050 64.7 6.4e-49 191.0
Cla04g00444 CCT 11 156 Response Regulator Gene Family AT1G19050 54.8 3.0e-38 155.6
Cla01g00731 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cla07g00490 . 23 154 Response Regulator Gene Family AT1G19050 60.6 1.9e-37 152.9
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT2G41310 54.1 1.1e-59 226.9
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT2G41310 68.5 4.7e-53 204.9
Cla01g00731 . 1 153 Response Regulator Gene Family AT2G41310 64.3 9.1e-49 190.7
Cla08g00600 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.7e-43 170.6
Cla07g00490 . 17 154 Response Regulator Gene Family AT2G41310 55.6 5.9e-40 161.4
Cla06g01631 . 31 178 Response Regulator Gene Family AT2G41310 55.5 4.2e-38 155.2
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT3G57040 53.1 3.0e-63 238.8
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT3G57040 70.9 2.6e-54 209.1
Cla01g00731 . 8 153 Response Regulator Gene Family AT3G57040 67.1 3.8e-50 195.3
Cla08g00600 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.0e-43 172.9
Cla07g00490 . 20 154 Response Regulator Gene Family AT3G57040 56.7 4.0e-39 158.7
Cla06g01631 . 28 187 Response Regulator Gene Family AT3G57040 52.7 2.6e-38 156.0
Cla06g01631 . 26 198 Response Regulator Gene Family AT1G74890 64.4 7.5e-50 194.1
Cla04g00444 CCT 12 172 Response Regulator Gene Family AT1G74890 52.1 2.7e-39 159.1
Cla01g00731 . 11 146 Response Regulator Gene Family AT1G74890 60.3 6.0e-39 157.9
Cla07g00490 . 23 150 Response Regulator Gene Family AT1G74890 60.2 5.6e-37 151.4
Cla07g00490 . 23 155 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT2G40670 52.8 1.6e-39 159.5
Cla06g01631 . 32 179 Response Regulator Gene Family AT2G40670 54.7 3.4e-37 151.8
Cla04g00444 CCT 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 150.6
Cla07g00490 . 5 155 Response Regulator Gene Family AT3G56380 66.4 6.9e-48 187.2
Cla06g01631 . 18 179 Response Regulator Gene Family AT3G56380 53.1 5.9e-39 157.5
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT3G56380 50.9 2.2e-38 155.6
Cla01g00731 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.9e-37 152.5
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla04g01184 . 567 1114 Response Regulator Gene Family AT5G61380 50.8 2.5e-141 499.6
Cla04g00859 . 38 205 Response Regulator Gene Family AT5G60100 68.0 5.9e-54 208.8
Cla01g00008 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.2e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002590 2 9 3 3 2 1 4 1 1 1 1 1 2 1 1 2 1 5 1 1 1 1 1 1 1 1 1 5 1 3 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60915 PF00072 Response_reg 2.70E-20 CL0304 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00859 Cla_Chr04 FPKM 36.257942 37.075813 26.163265 25.503994 35.705742 36.851681 35.879894 11.937747 13.18982 13.518629