Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00859 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGATTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTCTCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAATCGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTCTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACGTTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGAAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATGTCAATAATGTCACAACTACAACAATGCAAACTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGTGAAAACACGAGCAATGCAGGAGATGGCTAA 2340 43.21 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCFSGIGLLCKIMNHKSRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDVKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTENAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADVNNVTTTTMQTQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23598226 23606957 - ClCG04G008730.1 Cla04g00859 271087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00859 779 MobiDBLite consensus disorder prediction 668 692 - -
Cla04g00859 779 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Cla04g00859 779 MobiDBLite consensus disorder prediction 762 779 - -
Cla04g00859 779 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cla04g00859 779 MobiDBLite consensus disorder prediction 213 295 - -
Cla04g00859 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 755 IPR045279 GO:0009736
Cla04g00859 779 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Cla04g00859 779 Gene3D - 88 336 - -
Cla04g00859 779 ProSiteProfiles CCT domain profile. 725 767 IPR010402 GO:0005515
Cla04g00859 779 MobiDBLite consensus disorder prediction 1 55 - -
Cla04g00859 779 Pfam CCT motif 725 767 IPR010402 GO:0005515
Cla04g00859 779 MobiDBLite consensus disorder prediction 18 34 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 261 276 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 459 541 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 213 230 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 474 541 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 735 750 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 700 727 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 1 17 - -
Cla04g00859 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 755 - -
Cla04g00859 779 MobiDBLite consensus disorder prediction 668 779 - -
Cla04g00859 779 CDD psREC_PRR 91 194 - -
Cla04g00859 779 SMART REC_2 89 204 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00008 Cla-Chr1:70052 Cla04g00859 Cla-Chr4:23598226 2.85E-18 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla04g01184 Cla-Chr4:27017923 1.41E-18 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla04g00859 Cla-Chr4:23598226 3.57E-10 dispersed
Cla04g00859 Cla-Chr4:23598226 Cla06g01213 Cla-Chr6:25304932 1.04E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60915 PF00072 Response_reg 2.70E-20 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00859 K12129 - csv:101210765 1352.81