Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00866 | ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATTACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGTTTTTTGTGATTCTTGTAGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGGTGAAGATATTTTTGATTGTGAAGCTCTGTTTTGGGGCTTCAATGGCGGATATGCAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACCTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTACAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTGTTCTTTATATTGCAGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCTTACGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA | 1362 | 46.62 | MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDYGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWFFVILVGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQVKIFLIVKLCFGASMADMQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCATNFCSLNKSDSDRSELIMLFFILQLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPHLLRPAPPFLRYHFPPTNSVPHFYCST | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23672593 | 23677125 | + | ClCG04G008810.1 | Cla04g00866 | 271094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00866 | 453 | Pfam | AP2 domain | 115 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | Pfam | AP2 domain | 223 | 273 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | SUPERFAMILY | DNA-binding domain | 114 | 171 | IPR016177 | GO:0003677 | |
Cla04g00866 | 453 | PRINTS | Ethylene responsive element binding protein signature | 263 | 283 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | PRINTS | Ethylene responsive element binding protein signature | 225 | 236 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | ProSiteProfiles | AP2/ERF domain profile. | 224 | 281 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | CDD | AP2 | 114 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 183 | - | - | |
Cla04g00866 | 453 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 198 | 424 | - | - | |
Cla04g00866 | 453 | CDD | AP2 | 223 | 283 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | SUPERFAMILY | DNA-binding domain | 223 | 282 | IPR016177 | GO:0003677 | |
Cla04g00866 | 453 | ProSiteProfiles | AP2/ERF domain profile. | 115 | 169 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | Gene3D | AP2/ERF domain | 115 | 171 | IPR036955 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | Gene3D | AP2/ERF domain | 223 | 282 | IPR036955 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | SMART | rav1_2 | 115 | 175 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | SMART | rav1_2 | 224 | 287 | IPR001471 | GO:0003700|GO:0006355 | |
Cla04g00866 | 453 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 183 | - | - | |
Cla04g00866 | 453 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 198 | 424 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00866 | Cla-Chr4:23672593 | Cla11g00873 | Cla-Chr11:14128578 | 1.23E-08 | dispersed | |
Cla10g01959 | Cla-Chr10:35434753 | Cla04g00866 | Cla-Chr4:23672593 | 6.26E-98 | wgd | |
Cla02g02027 | Cla-Chr2:35285902 | Cla04g00866 | Cla-Chr4:23672593 | 8.85E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60916 | PF00847 | AP2 | 1.50E-10 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00866 | K09284 | - | csv:101211008 | 661.759 |