Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00866 ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATTACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGTTTTTTGTGATTCTTGTAGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGGTGAAGATATTTTTGATTGTGAAGCTCTGTTTTGGGGCTTCAATGGCGGATATGCAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACCTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTACAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTGTTCTTTATATTGCAGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCTTACGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1362 46.62 MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDYGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWFFVILVGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQVKIFLIVKLCFGASMADMQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCATNFCSLNKSDSDRSELIMLFFILQLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPHLLRPAPPFLRYHFPPTNSVPHFYCST 453
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 23672593 23677125 + ClCG04G008810.1 Cla04g00866 271094
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00866 453 Pfam AP2 domain 115 161 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 Pfam AP2 domain 223 273 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Cla04g00866 453 PRINTS Ethylene responsive element binding protein signature 263 283 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 ProSiteProfiles AP2/ERF domain profile. 224 281 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 CDD AP2 114 171 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 183 - -
Cla04g00866 453 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 198 424 - -
Cla04g00866 453 CDD AP2 223 283 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 SUPERFAMILY DNA-binding domain 223 282 IPR016177 GO:0003677
Cla04g00866 453 ProSiteProfiles AP2/ERF domain profile. 115 169 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 Gene3D AP2/ERF domain 115 171 IPR036955 GO:0003700|GO:0006355
Cla04g00866 453 Gene3D AP2/ERF domain 223 282 IPR036955 GO:0003700|GO:0006355
Cla04g00866 453 SMART rav1_2 115 175 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 SMART rav1_2 224 287 IPR001471 GO:0003700|GO:0006355
Cla04g00866 453 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 183 - -
Cla04g00866 453 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 198 424 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00866 Cla-Chr4:23672593 Cla11g00873 Cla-Chr11:14128578 1.23E-08 dispersed
Cla10g01959 Cla-Chr10:35434753 Cla04g00866 Cla-Chr4:23672593 6.26E-98 wgd
Cla02g02027 Cla-Chr2:35285902 Cla04g00866 Cla-Chr4:23672593 8.85E-111 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60916 PF00847 AP2 1.50E-10 CL0081 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00866 K09284 - csv:101211008 661.759