Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00873 ATGGTCAAGTCATGTGATGCATCTCTTTTATTAGAGATGAAAAAGGAAGAAGGTGTATCAGAAATGAAGTCTTCAAGAAGCTTTGGGATAAGAAATCTCAAATATGTTAATAAAATTAAACAAGTCCTTGAAAATGAATGCCCTAACACTGTTTCTTGTGCTGATATTATGGCTCTTGCTGCAAGAGATGCTATTGTTTTGTTGGGGGGATTAGAGATGGAAATGAAAACAGGAAGAAGAGATAGCAAAGAAAGCTATGGAGAAATAGTGGAAGAAATGATTCCAAATCATAATGACTCTCTTTCATTGGTTCTTTCTCGATTTCAAGATATTGGCATTGATCCTCAAGCTACTGTTGCTCTTTTAGGAGCCCACTCGGTGGGTCGAGTCCATTGTGTAAACATAGTGAACCGTCTCTACCCGACCGTGGACCCGACTTTGGATCCAGATCACGCAGAATATTTAAAAGAAAGGTGCCCAAACCCGAACCCGGATCCGAAGGCAGTCCAATACGCGAGAAATGATTTGGAAACTCCGATGGTGTTGGACAACAATTTCTACAAAAACAAGGAGAGATTAGAATGGATTGTCGACGTGTCAACAATTGATTGCCCAATGAAAATGCCAAAATCTAACAGCTCCTCCCAAAGGCCATTGAATTTCAGCCATGGAAGACGATTTCGACTTCGGCGACAAAGTCCCGCCGGCCGTCAACCGCATGGTACTCCACATCTCCCTTCACAGTATCGCCATCTCATGTTCTTTCTTCCTTGTTCACCTCCTAATCTGAGATCTCTCTTAATGCACATTCTCCTCGAGGGGAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGCTGCTCTTGGCTTTTCTTGTTGGAAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCTAAGAAGAAAATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG 1035 42.71 MVKSCDASLLLEMKKEEGVSEMKSSRSFGIRNLKYVNKIKQVLENECPNTVSCADIMALAARDAIVLLGGLEMEMKTGRRDSKESYGEIVEEMIPNHNDSLSLVLSRFQDIGIDPQATVALLGAHSVGRVHCVNIVNRLYPTVDPTLDPDHAEYLKERCPNPNPDPKAVQYARNDLETPMVLDNNFYKNKERLEWIVDVSTIDCPMKMPKSNSSSQRPLNFSHGRRFRLRRQSPAGRQPHGTPHLPSQYRHLMFFLPCSPPNLRSLLMHILLEGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23740425 23745015 - ClCG04G008890.2 Cla04g00873 271101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00873 344 Pfam DNA binding protein S1FA 280 344 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cla04g00873 344 PANTHER PEROXIDASE 21 2 191 - -
Cla04g00873 344 SUPERFAMILY Heme-dependent peroxidases 2 199 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 MobiDBLite consensus disorder prediction 318 344 - -
Cla04g00873 344 Pfam Peroxidase 2 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Plant peroxidase signature 69 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Plant peroxidase signature 116 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Plant peroxidase signature 50 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Plant peroxidase signature 173 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Plant peroxidase signature 31 44 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 MobiDBLite consensus disorder prediction 320 334 - -
Cla04g00873 344 PANTHER PEROXIDASE 25-RELATED 2 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 Gene3D - 1 95 - -
Cla04g00873 344 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Haem peroxidase superfamily signature 69 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Haem peroxidase superfamily signature 117 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 PRINTS Haem peroxidase superfamily signature 51 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla04g00873 344 Gene3D Peroxidase, domain 2 96 190 - -
Cla04g00873 344 ProSiteProfiles Plant heme peroxidase family profile. 1 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00873 Cla10g01940 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00443 Cla-Chr3:5022608 Cla04g00873 Cla-Chr4:23740425 2.10E-72 dispersed
Cla04g00873 Cla-Chr4:23740425 Cla07g00832 Cla-Chr7:23049341 2.34E-35 dispersed
Cla10g01942 Cla-Chr10:35260343 Cla04g00873 Cla-Chr4:23740425 1.03E-14 transposed
Cla10g01940 Cla-Chr10:35241311 Cla04g00873 Cla-Chr4:23740425 1.17E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60917 PF00141 peroxidase 1.10E-39 CL0617 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00873 K00430 - csv:101221151 350.903