Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00874 ATGATGTCTGGTATTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCTAATCTCAAATCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGATGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCCGAGATGGGTTTGAGCCAATTCATTGGCAATAATAATCCGGGATAA 1275 38.51 MMSGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNSINQSLFNSQLQDHNFESSPAFPQFLPPYNNLYLISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLMDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNNPG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23762728 23766165 + ClCG04G008920.2 Cla04g00874 271102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00874 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 352 - -
Cla04g00874 424 SMART c2h2final6 83 105 IPR013087 -
Cla04g00874 424 SMART c2h2final6 160 180 IPR013087 -
Cla04g00874 424 MobiDBLite consensus disorder prediction 1 68 - -
Cla04g00874 424 MobiDBLite consensus disorder prediction 34 56 - -
Cla04g00874 424 Gene3D Classic Zinc Finger 139 217 - -
Cla04g00874 424 Gene3D Classic Zinc Finger 63 136 - -
Cla04g00874 424 Pfam Zinc-finger double-stranded RNA-binding 83 105 IPR022755 -
Cla04g00874 424 MobiDBLite consensus disorder prediction 1 33 - -
Cla04g00874 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Cla04g00874 424 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 352 - -
Cla04g00874 424 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cla04g00874 424 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00874 Cla10g01937 CCT
Cla04g00874 Cla10g01937 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00219 Cla-Chr3:2550923 Cla04g00874 Cla-Chr4:23762728 3.35E-111 dispersed
Cla04g00874 Cla-Chr4:23762728 Cla07g01308 Cla-Chr7:30249706 9.28E-117 dispersed
Cla09g00573 Cla-Chr9:5334178 Cla04g00874 Cla-Chr4:23762728 7.74E-108 transposed
Cla10g01937 Cla-Chr10:35207330 Cla04g00874 Cla-Chr4:23762728 3.33E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60918 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00874 K25870 - csv:101221389 595.89