Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00878 | ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCACGGAAAATAGCCGCCACGGTGAGGAGTTTTATCCTTTTCTCTGCAATGTTTTTTTGCTTATTATCGAACCCCTTTTGATTGGTTTTAACGAAATTGAATCAGATAGACTAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCCGCAAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAATGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAAACCGACGTTAATGATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTGTAA | 1179 | 40.71 | MKFRGLLSNCCYSPSPTATENSRHGEEFYPFLCNVFLLIIEPLLIGFNEIESDRLDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFRKEEAVRFMKIGLLCVQENTMKRPRMSLALSMLMKETDVNDHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSL | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23789824 | 23792833 | + | ClCG04G008960.2 | Cla04g00878 | 271106 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00878 | 392 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 152 | - | - | |
Cla04g00878 | 392 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 51 | 370 | - | - | |
Cla04g00878 | 392 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 348 | IPR011009 | - | |
Cla04g00878 | 392 | ProSitePatterns | Protein kinases ATP-binding region signature. | 81 | 103 | IPR017441 | GO:0005524 | |
Cla04g00878 | 392 | SMART | serkin_6 | 75 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00878 | 392 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 199 | 211 | IPR008271 | GO:0004672|GO:0006468 | |
Cla04g00878 | 392 | Gene3D | Transferase(Phosphotransferase) domain 1 | 153 | 363 | - | - | |
Cla04g00878 | 392 | CDD | STKc_IRAK | 81 | 350 | - | - | |
Cla04g00878 | 392 | PANTHER | RECEPTOR-LIKE KINASE | 51 | 370 | - | - | |
Cla04g00878 | 392 | ProSiteProfiles | Protein kinase domain profile. | 75 | 341 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g00878 | 392 | Pfam | Protein kinase domain | 78 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00878 | Cla-Chr4:23789824 | Cla07g01015 | Cla-Chr7:26565312 | 5.54E-123 | dispersed | |
Cla04g00878 | Cla-Chr4:23789824 | Cla11g01693 | Cla-Chr11:30524384 | 6.17E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80502 | PF00069 | Pkinase | 1.10E-49 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00878 | - | - | csv:101214642 | 649.818 |