Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00878 ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCACGGAAAATAGCCGCCACGGTGAGGAGTTTTATCCTTTTCTCTGCAATGTTTTTTTGCTTATTATCGAACCCCTTTTGATTGGTTTTAACGAAATTGAATCAGATAGACTAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCCGCAAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAATGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAAACCGACGTTAATGATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTGTAA 1179 40.71 MKFRGLLSNCCYSPSPTATENSRHGEEFYPFLCNVFLLIIEPLLIGFNEIESDRLDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFRKEEAVRFMKIGLLCVQENTMKRPRMSLALSMLMKETDVNDHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23789824 23792833 + ClCG04G008960.2 Cla04g00878 271106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00878 392 Gene3D Phosphorylase Kinase; domain 1 47 152 - -
Cla04g00878 392 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 370 - -
Cla04g00878 392 SUPERFAMILY Protein kinase-like (PK-like) 55 348 IPR011009 -
Cla04g00878 392 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Cla04g00878 392 SMART serkin_6 75 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00878 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Cla04g00878 392 Gene3D Transferase(Phosphotransferase) domain 1 153 363 - -
Cla04g00878 392 CDD STKc_IRAK 81 350 - -
Cla04g00878 392 PANTHER RECEPTOR-LIKE KINASE 51 370 - -
Cla04g00878 392 ProSiteProfiles Protein kinase domain profile. 75 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00878 392 Pfam Protein kinase domain 78 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00878 Cla-Chr4:23789824 Cla07g01015 Cla-Chr7:26565312 5.54E-123 dispersed
Cla04g00878 Cla-Chr4:23789824 Cla11g01693 Cla-Chr11:30524384 6.17E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80502 PF00069 Pkinase 1.10E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00878 - - csv:101214642 649.818