Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00881 ATGTCTAAGGATGTTGAACCTGGGTTTTCCGCCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCGTTGCTACCCTTTTGTTTCTGTACGTTGGAGTGCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCGTATGCGCCGGCGTTGGTGTTCTGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCTCTCTCTCCCCTTTTGGTTTTATTTTTGCAATTTGCCCTAAATTTAATTGTATTAATACTTCAAGATGTTCAACAGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCGTTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACAGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCGCAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA 927 50.05 MSKDVEPGFSAGDYLDQPPAPFFDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCAGVGVLGIAWAFGGTIFVLVYCTAGISGKFCCSLSPFGFIFAICPKFNCINTSRCSTGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNRKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23808256 23811362 - ClCG04G008990.2 Cla04g00881 271109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00881 308 PANTHER AQUAPORIN PIP2-1 121 305 - -
Cla04g00881 308 PANTHER AQUAPORIN PIP2-1 6 109 - -
Cla04g00881 308 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 109 IPR034294 -
Cla04g00881 308 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 121 305 IPR034294 -
Cla04g00881 308 Pfam Major intrinsic protein 29 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 Pfam Major intrinsic protein 124 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 ProSitePatterns MIP family signature. 127 135 IPR022357 -
Cla04g00881 308 SUPERFAMILY Aquaporin-like 120 293 IPR023271 -
Cla04g00881 308 Gene3D Glycerol uptake facilitator protein. 20 308 IPR023271 -
Cla04g00881 308 SUPERFAMILY Aquaporin-like 27 95 IPR023271 -
Cla04g00881 308 CDD MIP 35 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 PRINTS Major intrinsic protein family signature 271 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 PRINTS Major intrinsic protein family signature 146 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00881 308 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00881 Cla-Chr4:23808256 Cla04g00884 Cla-Chr4:23832679 2.95E-116 dispersed
Cla04g00881 Cla-Chr4:23808256 Cla04g00883 Cla-Chr4:23822564 3.89E-146 proximal
Cla10g01933 Cla-Chr10:35173230 Cla04g00881 Cla-Chr4:23808256 1.48E-117 wgd
Cla02g02062 Cla-Chr2:35637260 Cla04g00881 Cla-Chr4:23808256 3.53E-139 wgd
Cla04g00881 Cla-Chr4:23808256 Cla08g00761 Cla-Chr8:19975775 2.99E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00881 K09872 - csv:101215842 512.301