Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00881 | ATGTCTAAGGATGTTGAACCTGGGTTTTCCGCCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCGTTGCTACCCTTTTGTTTCTGTACGTTGGAGTGCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCGTATGCGCCGGCGTTGGTGTTCTGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCTCTCTCTCCCCTTTTGGTTTTATTTTTGCAATTTGCCCTAAATTTAATTGTATTAATACTTCAAGATGTTCAACAGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCGTTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACAGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCGCAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA | 927 | 50.05 | MSKDVEPGFSAGDYLDQPPAPFFDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCAGVGVLGIAWAFGGTIFVLVYCTAGISGKFCCSLSPFGFIFAICPKFNCINTSRCSTGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNRKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23808256 | 23811362 | - | ClCG04G008990.2 | Cla04g00881 | 271109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00881 | 308 | PANTHER | AQUAPORIN PIP2-1 | 121 | 305 | - | - | |
Cla04g00881 | 308 | PANTHER | AQUAPORIN PIP2-1 | 6 | 109 | - | - | |
Cla04g00881 | 308 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 6 | 109 | IPR034294 | - | |
Cla04g00881 | 308 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 121 | 305 | IPR034294 | - | |
Cla04g00881 | 308 | Pfam | Major intrinsic protein | 29 | 95 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | Pfam | Major intrinsic protein | 124 | 288 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | ProSitePatterns | MIP family signature. | 127 | 135 | IPR022357 | - | |
Cla04g00881 | 308 | SUPERFAMILY | Aquaporin-like | 120 | 293 | IPR023271 | - | |
Cla04g00881 | 308 | Gene3D | Glycerol uptake facilitator protein. | 20 | 308 | IPR023271 | - | |
Cla04g00881 | 308 | SUPERFAMILY | Aquaporin-like | 27 | 95 | IPR023271 | - | |
Cla04g00881 | 308 | CDD | MIP | 35 | 291 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | PRINTS | Major intrinsic protein family signature | 271 | 291 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | PRINTS | Major intrinsic protein family signature | 195 | 213 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | PRINTS | Major intrinsic protein family signature | 35 | 54 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | PRINTS | Major intrinsic protein family signature | 146 | 165 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00881 | 308 | PRINTS | Major intrinsic protein family signature | 231 | 253 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00881 | Cla-Chr4:23808256 | Cla04g00884 | Cla-Chr4:23832679 | 2.95E-116 | dispersed | |
Cla04g00881 | Cla-Chr4:23808256 | Cla04g00883 | Cla-Chr4:23822564 | 3.89E-146 | proximal | |
Cla10g01933 | Cla-Chr10:35173230 | Cla04g00881 | Cla-Chr4:23808256 | 1.48E-117 | wgd | |
Cla02g02062 | Cla-Chr2:35637260 | Cla04g00881 | Cla-Chr4:23808256 | 3.53E-139 | wgd | |
Cla04g00881 | Cla-Chr4:23808256 | Cla08g00761 | Cla-Chr8:19975775 | 2.99E-142 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00881 | K09872 | - | csv:101215842 | 512.301 |