Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00883 | ATGGCCAAGGACTCTGATGCCGGAGGGTTCGCCGCCAAGGACTACCACGACCCTCCACCTGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCGTTTTACAGAGCCATCATCGCTGAGTTCATAGCCACTCTCCTCTTCTTGTACGTCACTGTTCTTACCGTCATTGGCTACAGTAGCCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGTGTTGGCATTCTCGGCATCGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTCAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACTGGCACTGGCTTAGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACGTTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCTGTGTTTATGGTTCATCTAGCCACCATTCCGGTTACCGGCACCGGTATTAACCCCGCTCGAAGCTTCGGTGCTGCAGTTGTCTTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTCATTTTGAGAGCTGGAGCTGTTAAAGCTTTGGGATCATTCAGGAGTACACACAGTGTTTGA | 855 | 50.18 | MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23822564 | 23824117 | - | ClCG04G009010.1 | Cla04g00883 | 271111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00883 | 284 | CDD | MIP | 36 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PANTHER | AQUAPORIN PIP2-4-RELATED | 7 | 281 | - | - | |
Cla04g00883 | 284 | Gene3D | Glycerol uptake facilitator protein. | 21 | 284 | IPR023271 | - | |
Cla04g00883 | 284 | SUPERFAMILY | Aquaporin-like | 28 | 268 | IPR023271 | - | |
Cla04g00883 | 284 | TIGRFAM | MIP: MIP family channel proteins | 40 | 263 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | ProSitePatterns | MIP family signature. | 102 | 110 | IPR022357 | - | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 36 | 55 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 84 | 108 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 121 | 140 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 170 | 188 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 206 | 228 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PRINTS | Major intrinsic protein family signature | 246 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00883 | 284 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 7 | 281 | IPR034294 | - | |
Cla04g00883 | 284 | Pfam | Major intrinsic protein | 29 | 263 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00883 | Cla-Chr4:23822564 | Cla05g02143 | Cla-Chr5:33021643 | 3.92E-173 | dispersed | |
Cla10g02079 | Cla-Chr10:36478749 | Cla04g00883 | Cla-Chr4:23822564 | 4.44E-127 | dispersed | |
Cla04g00881 | Cla-Chr4:23808256 | Cla04g00883 | Cla-Chr4:23822564 | 3.89E-146 | proximal | |
Cla04g00883 | Cla-Chr4:23822564 | Cla04g00884 | Cla-Chr4:23832679 | 5.62E-147 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00883 | K09872 | - | csv:101214884 | 549.28 |