Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00883 ATGGCCAAGGACTCTGATGCCGGAGGGTTCGCCGCCAAGGACTACCACGACCCTCCACCTGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCGTTTTACAGAGCCATCATCGCTGAGTTCATAGCCACTCTCCTCTTCTTGTACGTCACTGTTCTTACCGTCATTGGCTACAGTAGCCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGTGTTGGCATTCTCGGCATCGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTCAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACTGGCACTGGCTTAGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACGTTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCTGTGTTTATGGTTCATCTAGCCACCATTCCGGTTACCGGCACCGGTATTAACCCCGCTCGAAGCTTCGGTGCTGCAGTTGTCTTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTCATTTTGAGAGCTGGAGCTGTTAAAGCTTTGGGATCATTCAGGAGTACACACAGTGTTTGA 855 50.18 MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23822564 23824117 - ClCG04G009010.1 Cla04g00883 271111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00883 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PANTHER AQUAPORIN PIP2-4-RELATED 7 281 - -
Cla04g00883 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cla04g00883 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cla04g00883 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cla04g00883 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00883 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 -
Cla04g00883 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00883 Cla-Chr4:23822564 Cla05g02143 Cla-Chr5:33021643 3.92E-173 dispersed
Cla10g02079 Cla-Chr10:36478749 Cla04g00883 Cla-Chr4:23822564 4.44E-127 dispersed
Cla04g00881 Cla-Chr4:23808256 Cla04g00883 Cla-Chr4:23822564 3.89E-146 proximal
Cla04g00883 Cla-Chr4:23822564 Cla04g00884 Cla-Chr4:23832679 5.62E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00883 K09872 - csv:101214884 549.28