Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00884 ATGTCCTCTCGGAACCATTTGTTTCAAGAACCATCCAGAAACGAAACGAACCGAAACACAGCCATCCCCTGTGACACTGAGGTCACGAAAAGCAACAAAAACAGAGCCACAAAATGGGGCGTCTTCACTTCTTCCTCTTCCGCACTATATATATACATATTCCCACTACTCTGTTTTTCATCATCAACAAGCAAATTCTCCTCTGTTTTTCTAGAAGAAACACTCAATTTTGAAATTGTTGATATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACACATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGGAAGGTATCATTAGTGAGAGCCGTTTTGTACATGGTGGCTCAGTGTCTAGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACAAGTACGGCGGAGGAGCCAACTCGCTCTCCGACGGCTATAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCCGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACGATTCCGATCACCGGTACGGGCATCAACCCGGCTAGAAGCTTTGGAGCTGCAGTAGTGTTCAACCAATCCAAGCCATGGGATGATCAAGATCTCGAAGCCGGAGGCTTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCTCCATTAATCGACGCCGAAGAGTTCGCTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGAATTCTCGGCATCGCTTGGGCATTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGAATTTCCGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATCCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACGGCACCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACTGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCTCTCAACACAGCAGGAGCAATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCGCCAATATCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCCTTTTTTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTACGTTCAATTCCAAGGTGCAGCCAATATAGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 2649 49.68 MSSRNHLFQEPSRNETNRNTAIPCDTEVTKSNKNRATKWGVFTSSSSALYIYIFPLLCFSSSTSKFSSVFLEETLNFEIVDMSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKAFQNAHYNKYGGGANSLSDGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNQSKPWDDQDLEAGGFAAKDYQDPPPAPLIDAEEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYGTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSLNTAGAMSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSAANICGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFFYIVAQCLGAICGCALAKSLQKTYYVQFQGAANIVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVIYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23832679 23846858 + ClCG04G009020.1 Cla04g00884 271112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00884 882 CDD MIP 362 592 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 SUPERFAMILY Aquaporin-like 112 321 IPR023271 -
Cla04g00884 882 MobiDBLite consensus disorder prediction 1 25 - -
Cla04g00884 882 ProSitePatterns MIP family signature. 428 436 IPR022357 -
Cla04g00884 882 CDD MIP 120 328 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 CDD MIP 638 864 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 TIGRFAM MIP: MIP family channel proteins 366 588 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 TIGRFAM MIP: MIP family channel proteins 124 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 TIGRFAM MIP: MIP family channel proteins 642 860 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 335 605 IPR034294 -
Cla04g00884 882 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 612 879 IPR034294 -
Cla04g00884 882 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 82 330 IPR034294 -
Cla04g00884 882 SUPERFAMILY Aquaporin-like 354 594 IPR023271 -
Cla04g00884 882 PRINTS Major intrinsic protein family signature 496 514 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PRINTS Major intrinsic protein family signature 532 554 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PRINTS Major intrinsic protein family signature 572 592 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PRINTS Major intrinsic protein family signature 362 381 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PRINTS Major intrinsic protein family signature 410 434 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 PRINTS Major intrinsic protein family signature 447 466 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 SUPERFAMILY Aquaporin-like 631 866 IPR023271 -
Cla04g00884 882 PANTHER AQUAPORIN PIP2-4-RELATED 82 330 - -
Cla04g00884 882 ProSitePatterns MIP family signature. 186 194 IPR022357 -
Cla04g00884 882 PANTHER AQUAPORIN PIP2-4-RELATED 335 605 - -
Cla04g00884 882 PANTHER AQUAPORIN PIP2-4-RELATED 612 879 - -
Cla04g00884 882 ProSitePatterns MIP family signature. 700 708 IPR022357 -
Cla04g00884 882 Gene3D Glycerol uptake facilitator protein. 347 609 IPR023271 -
Cla04g00884 882 Gene3D Glycerol uptake facilitator protein. 105 331 IPR023271 -
Cla04g00884 882 Gene3D Glycerol uptake facilitator protein. 623 882 IPR023271 -
Cla04g00884 882 Pfam Major intrinsic protein 113 326 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 Pfam Major intrinsic protein 632 861 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00884 882 Pfam Major intrinsic protein 355 589 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02062 Cla-Chr2:35637260 Cla04g00884 Cla-Chr4:23832679 4.73E-136 dispersed
Cla04g00881 Cla-Chr4:23808256 Cla04g00884 Cla-Chr4:23832679 2.95E-116 dispersed
Cla04g00884 Cla-Chr4:23832679 Cla07g00381 Cla-Chr7:4593508 0 dispersed
Cla10g01933 Cla-Chr10:35173230 Cla04g00884 Cla-Chr4:23832679 6.19E-121 dispersed
Cla04g00883 Cla-Chr4:23822564 Cla04g00884 Cla-Chr4:23832679 5.62E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00884 K09872 - csv:101215366 527.324