Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00884 | ATGTCCTCTCGGAACCATTTGTTTCAAGAACCATCCAGAAACGAAACGAACCGAAACACAGCCATCCCCTGTGACACTGAGGTCACGAAAAGCAACAAAAACAGAGCCACAAAATGGGGCGTCTTCACTTCTTCCTCTTCCGCACTATATATATACATATTCCCACTACTCTGTTTTTCATCATCAACAAGCAAATTCTCCTCTGTTTTTCTAGAAGAAACACTCAATTTTGAAATTGTTGATATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACACATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGGAAGGTATCATTAGTGAGAGCCGTTTTGTACATGGTGGCTCAGTGTCTAGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACAAGTACGGCGGAGGAGCCAACTCGCTCTCCGACGGCTATAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCCGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACGATTCCGATCACCGGTACGGGCATCAACCCGGCTAGAAGCTTTGGAGCTGCAGTAGTGTTCAACCAATCCAAGCCATGGGATGATCAAGATCTCGAAGCCGGAGGCTTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCTCCATTAATCGACGCCGAAGAGTTCGCTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGAATTCTCGGCATCGCTTGGGCATTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGAATTTCCGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATCCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACGGCACCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACTGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCTCTCAACACAGCAGGAGCAATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCGCCAATATCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCCTTTTTTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTACGTTCAATTCCAAGGTGCAGCCAATATAGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA | 2649 | 49.68 | MSSRNHLFQEPSRNETNRNTAIPCDTEVTKSNKNRATKWGVFTSSSSALYIYIFPLLCFSSSTSKFSSVFLEETLNFEIVDMSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKAFQNAHYNKYGGGANSLSDGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNQSKPWDDQDLEAGGFAAKDYQDPPPAPLIDAEEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYGTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSLNTAGAMSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSAANICGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFFYIVAQCLGAICGCALAKSLQKTYYVQFQGAANIVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVIYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL | 882 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23832679 | 23846858 | + | ClCG04G009020.1 | Cla04g00884 | 271112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00884 | 882 | CDD | MIP | 362 | 592 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | SUPERFAMILY | Aquaporin-like | 112 | 321 | IPR023271 | - | |
Cla04g00884 | 882 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cla04g00884 | 882 | ProSitePatterns | MIP family signature. | 428 | 436 | IPR022357 | - | |
Cla04g00884 | 882 | CDD | MIP | 120 | 328 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | CDD | MIP | 638 | 864 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | TIGRFAM | MIP: MIP family channel proteins | 366 | 588 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | TIGRFAM | MIP: MIP family channel proteins | 124 | 322 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | TIGRFAM | MIP: MIP family channel proteins | 642 | 860 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 335 | 605 | IPR034294 | - | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 612 | 879 | IPR034294 | - | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 82 | 330 | IPR034294 | - | |
Cla04g00884 | 882 | SUPERFAMILY | Aquaporin-like | 354 | 594 | IPR023271 | - | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 496 | 514 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 532 | 554 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 572 | 592 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 362 | 381 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 410 | 434 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | PRINTS | Major intrinsic protein family signature | 447 | 466 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | SUPERFAMILY | Aquaporin-like | 631 | 866 | IPR023271 | - | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN PIP2-4-RELATED | 82 | 330 | - | - | |
Cla04g00884 | 882 | ProSitePatterns | MIP family signature. | 186 | 194 | IPR022357 | - | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN PIP2-4-RELATED | 335 | 605 | - | - | |
Cla04g00884 | 882 | PANTHER | AQUAPORIN PIP2-4-RELATED | 612 | 879 | - | - | |
Cla04g00884 | 882 | ProSitePatterns | MIP family signature. | 700 | 708 | IPR022357 | - | |
Cla04g00884 | 882 | Gene3D | Glycerol uptake facilitator protein. | 347 | 609 | IPR023271 | - | |
Cla04g00884 | 882 | Gene3D | Glycerol uptake facilitator protein. | 105 | 331 | IPR023271 | - | |
Cla04g00884 | 882 | Gene3D | Glycerol uptake facilitator protein. | 623 | 882 | IPR023271 | - | |
Cla04g00884 | 882 | Pfam | Major intrinsic protein | 113 | 326 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | Pfam | Major intrinsic protein | 632 | 861 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00884 | 882 | Pfam | Major intrinsic protein | 355 | 589 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02062 | Cla-Chr2:35637260 | Cla04g00884 | Cla-Chr4:23832679 | 4.73E-136 | dispersed | |
Cla04g00881 | Cla-Chr4:23808256 | Cla04g00884 | Cla-Chr4:23832679 | 2.95E-116 | dispersed | |
Cla04g00884 | Cla-Chr4:23832679 | Cla07g00381 | Cla-Chr7:4593508 | 0 | dispersed | |
Cla10g01933 | Cla-Chr10:35173230 | Cla04g00884 | Cla-Chr4:23832679 | 6.19E-121 | dispersed | |
Cla04g00883 | Cla-Chr4:23822564 | Cla04g00884 | Cla-Chr4:23832679 | 5.62E-147 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00884 | K09872 | - | csv:101215366 | 527.324 |