Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00887 ATGCCTACTTCTAGTAGATGGAGATCAGTGACCACAGTAAGATTCGAAGACGAAGAACTCGAAAATGGCGAAGCAGGGAGGAGGAGAAAGAGAGGAAGAAGGAAATGTGAGGGAATGTTTTGTGATTCAGATCAAGATTATGATGTGGTGAAGGGAATGGTACTAGATCCAAATCTGCCCATACTGAACAAATGGAATAGGGTTTTTCTGGTGGCTTGTTTGGTGTCACTATTTGTGGACCCTGTGTTCTTCTTCTTGCCGGTGGTGAACGTGGAGGAGGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACGGTGGTCCGGTCGATTGCGGATGTGTTCTACATAACACACATACTGGTTAGGTTTAGGACAGCTTACGTAGCTCCCTCGTCCAGGATCTTTGGAAGAGGAGAGCTCGTGATTCACCCTTCTAAGATTGCTGCTAACTATCTCGTTTTCGAGTTTTGGCTTCATTTTGTTGCTGCATTACCTCTTCCACAGGCATTCGTATGGGTTGCAATACCAAAAATGAGGGCGTGGAGTTACTTTGTTCGTTTCTCCATTTTGTTACAATACCTTCTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTTTGATGAAAACAGCTTGGGTTGGAGCTGGTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTTTTGGGATCATGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCAGCATTTGGATTGCCAATATGAGCTTTTTTATTGTAAAGCTTTACAGAGAGATTCAAATAAAGCTGCTTGGTTTCAACATTATCAAGCAACCAATATTTCAAATTTATGTCATCCAAGTGCCACCAATTTCTTTCACTTTGGGATCTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCTTCACTAGGTACTTGTATTGTTTCTGGTGGGGATTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTCGCCATTGTGATTGCCATTGTTGGGTTGGTGCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACGACATTAAGACTAGAAGAATGGAGAGTAAGAAGAAGAGACACGGAGCAATGGATGCAACACAGACAATTACCAAATCAATTAAAACAAAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTAAAATCCCTTCCTCTCGATCTCCGACGACAAATCAAACGCCATCTCTGTCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTAGACGCAATTTGCGAGCGATTAAAACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTTATAATCCGTGGCCATCTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAATTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTTCCTTGGGCGTTGGATGATCCTGGGGCGGCAGCGGTGTTGCCGTCTTCCACGAGGACGGTGACGGCGGTGACGGAGGTGGAAGGGTTTGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAGGCTGCATAGTAAGCAGATTAGGTGTACTTTTAGGTTTCACTCGCAGCAGTGGAGGACGTGGGCGGCGTGTTTTATTCAGGCGGCGTGGGTTAGGTATAAGCGGCGGCAGAAGAAGGAAGGTGAGATTAATGTTGTGAGGAAGATGAGTGTTGTTCGTCATAGGTCGTTGGTGAAGCCGCTTCAAATTGATTTCTCGGTGGAAGATAGATGA 1938 45.1 MPTSSRWRSVTTVRFEDEELENGEAGRRRKRGRRKCEGMFCDSDQDYDVVKGMVLDPNLPILNKWNRVFLVACLVSLFVDPVFFFLPVVNVEEGCVEMSGALGVALTVVRSIADVFYITHILVRFRTAYVAPSSRIFGRGELVIHPSKIAANYLVFEFWLHFVAALPLPQAFVWVAIPKMRAWSYFVRFSILLQYLLRLYLIFPLSDQIIKATGVLMKTAWVGAGYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGQHLDCQYELFYCKALQRDSNKAAWFQHYQATNISNLCHPSATNFFHFGIFSDSFASTSSPFFTRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLKPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPGAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRRLHSKQIRCTFRFHSQQWRTWAACFIQAAWVRYKRRQKKEGEINVVRKMSVVRHRSLVKPLQIDFSVEDR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23866399 23870480 + ClCG04G009060.2 Cla04g00887 271115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00887 645 PANTHER PROTEIN CNGC15A 37 624 - -
Cla04g00887 645 SUPERFAMILY Voltage-gated potassium channels 64 379 - -
Cla04g00887 645 SMART cnmp_10 457 589 IPR000595 -
Cla04g00887 645 Gene3D Jelly Rolls 455 576 IPR014710 -
Cla04g00887 645 Pfam Ion transport protein 65 384 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla04g00887 645 CDD CAP_ED 457 577 IPR000595 -
Cla04g00887 645 Gene3D - 69 381 - -
Cla04g00887 645 SUPERFAMILY cAMP-binding domain-like 387 578 IPR018490 -
Cla04g00887 645 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 624 - -
Cla04g00887 645 ProSiteProfiles cAMP/cGMP binding motif profile. 457 543 IPR000595 -
Cla04g00887 645 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla04g00887 645 PRINTS EAG/ELK/ERG potassium channel family signature 233 243 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla04g00887 645 PRINTS EAG/ELK/ERG potassium channel family signature 352 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla04g00887 645 PRINTS EAG/ELK/ERG potassium channel family signature 370 379 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla04g00887 645 PRINTS EAG/ELK/ERG potassium channel family signature 420 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla04g00887 645 Gene3D Helix hairpin bin 385 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00887 Cla-Chr4:23866399 Cla06g01285 Cla-Chr6:26208231 0 dispersed
Cla04g00887 Cla-Chr4:23866399 Cla10g01367 Cla-Chr10:28734213 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00887 K05391 - csv:101221856 1050.81