Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00891 ATGGTCGACGGAAAACAGTTATTTATGTTCTACAGGATGATTACGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTTGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGTGTCGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCATGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCCTTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTAAACACTGTTCTTTTCTCCCTATCTGCATTCATTGCAAATAATCAATGTATTCTGAACATGATGATGATTCGTGGTAGTTTGCGTTTTAAATTGAAAATGTACCTGCAAGATTCTAATATACCACAACATTTCATTCAATTGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAACTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTTGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2277 44.14 MVDGKQLFMFYRMITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVNTVLFSLSAFIANNQCILNMMMIRGSLRFKLKMYLQDSNIPQHFIQLVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23915331 23919442 + ClCG04G009110.2 Cla04g00891 271119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00891 758 SUPERFAMILY DNA-binding pseudobarrel domain 126 237 IPR015300 -
Cla04g00891 758 MobiDBLite consensus disorder prediction 610 645 - -
Cla04g00891 758 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Cla04g00891 758 ProSiteProfiles PB1 domain profile. 672 752 IPR000270 GO:0005515
Cla04g00891 758 PANTHER AUXIN RESPONSE FACTOR 430 749 - -
Cla04g00891 758 PANTHER AUXIN RESPONSE FACTOR 18 384 - -
Cla04g00891 758 Pfam Auxin response factor 299 382 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla04g00891 758 Gene3D - 336 386 - -
Cla04g00891 758 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 430 749 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla04g00891 758 CDD B3_DNA 131 232 IPR003340 GO:0003677
Cla04g00891 758 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Cla04g00891 758 MobiDBLite consensus disorder prediction 610 646 - -
Cla04g00891 758 Gene3D - 130 234 IPR015300 -
Cla04g00891 758 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 384 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla04g00891 758 SMART B3_2 132 234 IPR003340 GO:0003677
Cla04g00891 758 Gene3D - 671 756 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00891 Cla-Chr4:23915331 Cla08g01088 Cla-Chr8:23631944 3.83E-104 dispersed
Cla02g02068 Cla-Chr2:35722164 Cla04g00891 Cla-Chr4:23915331 5.80E-105 wgd
Cla04g00891 Cla-Chr4:23915331 Cla08g00767 Cla-Chr8:20014235 1.68E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60919 PF02362 B3 1.70E-21 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00891 - - csv:101217039 1371.3