Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00891 | ATGGTCGACGGAAAACAGTTATTTATGTTCTACAGGATGATTACGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTTGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGTGTCGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCATGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCCTTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTAAACACTGTTCTTTTCTCCCTATCTGCATTCATTGCAAATAATCAATGTATTCTGAACATGATGATGATTCGTGGTAGTTTGCGTTTTAAATTGAAAATGTACCTGCAAGATTCTAATATACCACAACATTTCATTCAATTGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAACTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTTGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG | 2277 | 44.14 | MVDGKQLFMFYRMITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVNTVLFSLSAFIANNQCILNMMMIRGSLRFKLKMYLQDSNIPQHFIQLVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA | 758 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23915331 | 23919442 | + | ClCG04G009110.2 | Cla04g00891 | 271119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00891 | 758 | SUPERFAMILY | DNA-binding pseudobarrel domain | 126 | 237 | IPR015300 | - | |
Cla04g00891 | 758 | MobiDBLite | consensus disorder prediction | 610 | 645 | - | - | |
Cla04g00891 | 758 | ProSiteProfiles | B3 DNA-binding domain profile. | 132 | 234 | IPR003340 | GO:0003677 | |
Cla04g00891 | 758 | ProSiteProfiles | PB1 domain profile. | 672 | 752 | IPR000270 | GO:0005515 | |
Cla04g00891 | 758 | PANTHER | AUXIN RESPONSE FACTOR | 430 | 749 | - | - | |
Cla04g00891 | 758 | PANTHER | AUXIN RESPONSE FACTOR | 18 | 384 | - | - | |
Cla04g00891 | 758 | Pfam | Auxin response factor | 299 | 382 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla04g00891 | 758 | Gene3D | - | 336 | 386 | - | - | |
Cla04g00891 | 758 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 430 | 749 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla04g00891 | 758 | CDD | B3_DNA | 131 | 232 | IPR003340 | GO:0003677 | |
Cla04g00891 | 758 | Pfam | B3 DNA binding domain | 132 | 233 | IPR003340 | GO:0003677 | |
Cla04g00891 | 758 | MobiDBLite | consensus disorder prediction | 610 | 646 | - | - | |
Cla04g00891 | 758 | Gene3D | - | 130 | 234 | IPR015300 | - | |
Cla04g00891 | 758 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 18 | 384 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla04g00891 | 758 | SMART | B3_2 | 132 | 234 | IPR003340 | GO:0003677 | |
Cla04g00891 | 758 | Gene3D | - | 671 | 756 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00891 | Cla-Chr4:23915331 | Cla08g01088 | Cla-Chr8:23631944 | 3.83E-104 | dispersed | |
Cla02g02068 | Cla-Chr2:35722164 | Cla04g00891 | Cla-Chr4:23915331 | 5.80E-105 | wgd | |
Cla04g00891 | Cla-Chr4:23915331 | Cla08g00767 | Cla-Chr8:20014235 | 1.68E-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60919 | PF02362 | B3 | 1.70E-21 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00891 | - | - | csv:101217039 | 1371.3 |