Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00895 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCGGCCGGAACAATATCAACCATGATCCATTGAATTGGGGAGTGGCGGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTTGAGGCCAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAACTCGGGAATATTTGGAAATGGCATTGAATCAAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCGAAGGAGGCTTTCAAACAAGCTGGTATTTCGTCTGGGTTTTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTGTCGGCTATTTTTGCAGAGGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTGTTATGTTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGCTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGGAACTTCCAGGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTCTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCCGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTAAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAACACAATAAGCCAAGTGGTCAAGAAGGTCCTTACCACCGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGCCACTTATCCGTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGAGGAACTAAAAGCTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCGTTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAACTGAGTTAGGAACTGAGTTACTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTTATCGCATTATGTCAAGGAAAGATGATTGACCCAATTTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGCTAA 2145 43.92 MAESGHQNGFEFCIGGRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSCYVKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVVKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEEELKAVLPKEVESARFAYENGNFTVQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23967227 23970242 + ClCG04G009141.1 Cla04g00895 271123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00895 714 Gene3D - 527 648 IPR023144 -
Cla04g00895 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 714 - -
Cla04g00895 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Cla04g00895 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Cla04g00895 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla04g00895 714 PANTHER HISTIDINE AMMONIA-LYASE 17 714 IPR001106 -
Cla04g00895 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cla04g00895 714 Pfam Aromatic amino acid lyase 61 534 IPR001106 -
Cla04g00895 714 CDD PAL-HAL 59 524 IPR001106 -
Cla04g00895 714 Gene3D - 14 260 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00895 Cla-Chr4:23967227 Cla04g00897 Cla-Chr4:23990787 0 dispersed
Cla04g00895 Cla-Chr4:23967227 Cla04g00896 Cla-Chr4:23976446 0 tandem
Cla03g01470 Cla-Chr3:30213152 Cla04g00895 Cla-Chr4:23967227 0 transposed
Cla02g02074 Cla-Chr2:35835235 Cla04g00895 Cla-Chr4:23967227 0 wgd
Cla04g00895 Cla-Chr4:23967227 Cla08g00772 Cla-Chr8:20117545 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00895 K10775 - csv:101217907 1349.34