Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00896 ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCGCCATTACTACTCATCCTGACCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCAATGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTAATGCAAAAGTTAAGACAAGTTATTGTTGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGACCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTACTGCATTGTGTGAAGGAAAGATGATTGATCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATGTTAA 3129 42.76 MAPVDQTNDSFCAITTHPDPLNWGLAADSLKGSHLNEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKTILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCEGKMIDPILECLKEWNGAPIPIC 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23976446 23988011 + ClCG04G009143.1 Cla04g00896 271124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00896 1042 CDD PAL-HAL 453 852 IPR001106 -
Cla04g00896 1042 SUPERFAMILY L-aspartase-like 452 1042 IPR008948 GO:0003824
Cla04g00896 1042 Pfam Aromatic amino acid lyase 57 451 IPR001106 -
Cla04g00896 1042 Pfam Aromatic amino acid lyase 453 865 IPR001106 -
Cla04g00896 1042 SUPERFAMILY L-aspartase-like 19 451 IPR008948 GO:0003824
Cla04g00896 1042 Gene3D - 11 256 IPR024083 -
Cla04g00896 1042 PANTHER HISTIDINE AMMONIA-LYASE 15 451 IPR001106 -
Cla04g00896 1042 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 524 540 IPR022313 GO:0016841
Cla04g00896 1042 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 450 1042 - -
Cla04g00896 1042 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 15 451 - -
Cla04g00896 1042 PANTHER HISTIDINE AMMONIA-LYASE 450 1042 IPR001106 -
Cla04g00896 1042 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Cla04g00896 1042 Gene3D Fumarase/aspartase (Central domain) 589 1037 - -
Cla04g00896 1042 Gene3D Fumarase/aspartase (Central domain) 257 456 - -
Cla04g00896 1042 CDD PAL-HAL 55 451 IPR001106 -
Cla04g00896 1042 Gene3D - 855 976 IPR023144 -
Cla04g00896 1042 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 451 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla04g00896 1042 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 450 1032 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00896 Cla-Chr4:23976446 Cla04g00899 Cla-Chr4:24000234 0 dispersed
Cla04g00895 Cla-Chr4:23967227 Cla04g00896 Cla-Chr4:23976446 0 tandem
Cla04g00896 Cla-Chr4:23976446 Cla04g00897 Cla-Chr4:23990787 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00896 K10775 - csv:101218382 1141.33