Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00897 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGTGCTTGTGCACTAGCCACAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACTATTTCTCAAGTAGCTGCTATTGCTACTCGGGACTTTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAAATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCTAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGGCTGTTCTGGCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCTAAACAAGATCGCTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCATTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAATCAAGATGTTAACTCTTTAGGTTTAATTTCTTCAAGGAAAACAGTTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTATTAACCACATCCTCTAATGGCGCACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTACCCATTAAGCCAAAAATTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTATCAGGAGAAAGAGTAATATCTCCAGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.06 MAPTQFQQQNGSMECLCTSHNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLSGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23990787 23992928 - ClCG04G009144.1 Cla04g00897 271125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00897 713 CDD PAL-HAL 58 523 IPR001106 -
Cla04g00897 713 Gene3D - 14 259 IPR024083 -
Cla04g00897 713 Pfam Aromatic amino acid lyase 60 532 IPR001106 -
Cla04g00897 713 Gene3D - 526 647 IPR023144 -
Cla04g00897 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 -
Cla04g00897 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 713 - -
Cla04g00897 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cla04g00897 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla04g00897 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Cla04g00897 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02074 Cla-Chr2:35835235 Cla04g00897 Cla-Chr4:23990787 0 dispersed
Cla04g00895 Cla-Chr4:23967227 Cla04g00897 Cla-Chr4:23990787 0 dispersed
Cla04g00897 Cla-Chr4:23990787 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla04g00896 Cla-Chr4:23976446 Cla04g00897 Cla-Chr4:23990787 0 tandem
Cla04g00897 Cla-Chr4:23990787 Cla04g00898 Cla-Chr4:23995990 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00897 K10775 - csv:101218617 1340.87