Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00898 ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCGATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTGTGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGATTGTGAAATTGGCTGAGTCTGCTAGGGGGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACCGGATTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGACTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGTTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCCTCTATTGTCCTATTTGAGGCAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCCGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGATAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCTACTTATCCGTTGATGCAAAAATTGAGACAAGTATTGGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACATGAACACTTCCATCTTCCAGAAGATTACTGATTTTGAAGAGGAATTAAAAGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAGGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGACTGGAGAAAGGGTTATATCTCCCGGAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCGTTGA 2151 42.35 MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVIVKLAESARGGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIVGLLTGRHNSKAIGPNGETLDAETAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITDFEEELKAILPKEIENARLAYESGNSKIANQIRDCRSYPLYRFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23995990 23998140 - ClCG04G009146.1 Cla04g00898 271126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00898 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Cla04g00898 716 Gene3D - 529 650 IPR023144 -
Cla04g00898 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla04g00898 716 CDD PAL-HAL 61 526 IPR001106 -
Cla04g00898 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 715 - -
Cla04g00898 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cla04g00898 716 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 -
Cla04g00898 716 Gene3D - 17 262 IPR024083 -
Cla04g00898 716 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Cla04g00898 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01470 Cla-Chr3:30213152 Cla04g00898 Cla-Chr4:23995990 0 dispersed
Cla04g00898 Cla-Chr4:23995990 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla04g00897 Cla-Chr4:23990787 Cla04g00898 Cla-Chr4:23995990 0 tandem
Cla04g00898 Cla-Chr4:23995990 Cla04g00899 Cla-Chr4:24000234 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00898 K10775 - csv:101222092 1350.88