Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00899 ATGGCCCCAATGGAGACCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGCTGCCATTGCTACTCGAGATTCTGATGTTGTTGTTGAGCTTTCTGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTATGGAGTTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACTGAGTCTAGTCATACTTTGCCTCATTCAGCTACAAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGTCTTGATGCAAAGAAGGCTTTCCAACAAGCTGGCATTCCATCAGGGTTTTTCGAATTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGCTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAAATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAACGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAGATCCAGTGACAAGTCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACGGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTCTAGTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGACAGAGAGTATACTTTTGCATATATAGACGATCCATGCAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAACACGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCATACGAGAGTGGAAAAGCACCTATTAAGAATCAAATTGAAGAATGCAGATCTTATCCATTATACAGATTTGTGAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTCCCATATGTTAG 2118 41.88 MAPMETICKSSIHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVVVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKKAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKTIVSQVAKKVLTTSSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECRSYPLYRFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24000234 24002351 - ClCG04G009147.1 Cla04g00899 271127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00899 705 CDD PAL-HAL 50 515 IPR001106 -
Cla04g00899 705 Pfam Aromatic amino acid lyase 52 528 IPR001106 -
Cla04g00899 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 6 705 - -
Cla04g00899 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla04g00899 705 PANTHER HISTIDINE AMMONIA-LYASE 6 705 IPR001106 -
Cla04g00899 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Cla04g00899 705 Gene3D - 518 639 IPR023144 -
Cla04g00899 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Cla04g00899 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824
Cla04g00899 705 Gene3D - 6 251 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00896 Cla-Chr4:23976446 Cla04g00899 Cla-Chr4:24000234 0 dispersed
Cla04g00899 Cla-Chr4:24000234 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla04g00898 Cla-Chr4:23995990 Cla04g00899 Cla-Chr4:24000234 0 tandem
Cla04g00899 Cla-Chr4:24000234 Cla04g00900 Cla-Chr4:24005112 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00899 K10775 - csv:101218856 1330.08