Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00900 ATGGCCCTAGTCAAGACCATTTGCAAGAGCTTCATTCATGACCCACTTAACTGGGGTGTGGCGGCTGAGTCCTTCAAGGGAAGTCATCTTGATGAGGTCAAGCGCATGGTGGAGGAGTATCGGAGGCCTCTTGTCAAGCTTGACGGTGAGACACTCACCATTTCTCAAGTGGCTGCTATTGCTATTCGGGACACTGATGTTATTGTCGAGCTTTCAGAGTCTACTAGAGTTGGTGTTAAAGCTAGTAGTGATTGGATTATGGAAAGTATGAATAAGGGAACTGATAGTTATGGTATCACTACTGGATTTGGTGCTACATCCCATAGAAGAACCAAACAAGGTGAGGCTCTTCAAAATGAGCTTATTAGATTTTTAAATGCTGGAATTTTTGGAAGTGGCATTGAAACGAGTCATAGTTTGCCCCACTCTGCTACAAGAGCGGCCATGTTGGTGAGGACCAATACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATTACAAAACTCTTGAATCATAATGTCACTCCGTACTTGCCTCTTCGTGGAACCATTAGTGCCTCTGGTGATCTTGTTCCTCTTTCTTACATTGTTGGATTGCTCACTGGTCGACCGAACTCCAAAGCTGTTGGTCCAAATGGAGAAAATCTTGATGCAAAGGAGGCTTTCAAACAAGCTGGTATTACTTCTGGGTTCTTTGAGTTGCGTCCTAAAGAAGGTTTCGCTCTTGTCAATAGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGTTGTTTTATTCGAGATTTTGTCAGCCATCTTTGTTGAAGTTATGCAAGGCAAGCCTGAGTTTACTGACTATTTGACTCATAAGTTGAAGCATCATCCAGGTCAAATTGAGGCAGCTGCAATTATGGAACACATTTTGGATGGGAGTTCTTATATGAAAACTGCCAAGAAACTATATGAGATCAATCCTCTTCAAAAGCCAAAACAAGATCGATATGCTCTTAGAACTTCTCCTCAATGGCTCGGTCCATTGATTGAAGTTATTCGATTCTCAACGAAGTCCATTGAGCGAGAGATTAATTCAGTCAACGACAACCCTTTAATCGATGTTTCAAGGAACAAGGTTTTGCATGGAGGCAACTTCCAAGGAACTCCGATCGGAATTTCAATGGACAATACTCGTCTTGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTCGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATATTTTTGCAAGTAAAAACCCAAACTTGGATTATGGGTTTAAAGGTGCTGAAATTGTTATGGTTTCATATTGCTCTGAGCTACAATATCTTGCAAATTCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAAGATATTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCAGAAGCCATTGACATTTTAAAACTCATGGCTTCTACATTTTTAATTGTTTTGTGCCAAGCAATCGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACGGTTAAAAGTACAGTAAGCCTAGTAGCACAAAAGGTGTTGATCACATCCTCTAATGGTGCACTCGATCCCTCAAGATTGTTCGAGAAGGATTTACTGAAGGTCGTCGATCAAGAGTACACTTTTGCCTATATAGATGACCCATGTAGTGCTACTTACCCATTGATGCAGAAATTGAGACAAGTTTTCGTTGAACACGCACTTGCAATTGGTGATGATGGAAATAATGCAAACACTTCAATCTTTCAAAAGATTTCTATTTTCGAAGATGAACTGAAGGCAATTTTACCACAAAATGTTGAAAATACAAGATTAGCATATGAGAGTGGAAATGCACAAATTAAGAACCAAATTGAGAAATGCACATCTTACCCATTATATAGATTTGTGAGGGAAGAGTTGGGAACAAAATTACTAACCGGTGAAAAGGTAATATCTCTCGGAGGAGAGTGTGAAAAAGTATTCGCCGCTTTATGTGAAGGAAAGATGATCGATTCTATTCTAGAATGCTTGAAGGAGTGGAATGGTTCTCCAGTTCCCATATATTAG 2118 39.99 MALVKTICKSFIHDPLNWGVAAESFKGSHLDEVKRMVEEYRRPLVKLDGETLTISQVAAIAIRDTDVIVELSESTRVGVKASSDWIMESMNKGTDSYGITTGFGATSHRRTKQGEALQNELIRFLNAGIFGSGIETSHSLPHSATRAAMLVRTNTLLQGYSGIRFEILEAITKLLNHNVTPYLPLRGTISASGDLVPLSYIVGLLTGRPNSKAVGPNGENLDAKEAFKQAGITSGFFELRPKEGFALVNSTAVGSGLASIVLFEANILVVLFEILSAIFVEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLYEINPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKVLHGGNFQGTPIGISMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNIFASKNPNLDYGFKGAEIVMVSYCSELQYLANSVTSHVQSAEQHNQDINSLGLISSRKTAEAIDILKLMASTFLIVLCQAIDLRHLEENLKSTVKSTVSLVAQKVLITSSNGALDPSRLFEKDLLKVVDQEYTFAYIDDPCSATYPLMQKLRQVFVEHALAIGDDGNNANTSIFQKISIFEDELKAILPQNVENTRLAYESGNAQIKNQIEKCTSYPLYRFVREELGTKLLTGEKVISLGGECEKVFAALCEGKMIDSILECLKEWNGSPVPIY 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24005112 24007229 - ClCG04G009149.1 Cla04g00900 271128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00900 705 CDD PAL-HAL 50 515 IPR001106 -
Cla04g00900 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 8 704 - -
Cla04g00900 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Cla04g00900 705 Gene3D - 518 639 IPR023144 -
Cla04g00900 705 PANTHER HISTIDINE AMMONIA-LYASE 8 704 IPR001106 -
Cla04g00900 705 Pfam Aromatic amino acid lyase 52 524 IPR001106 -
Cla04g00900 705 Gene3D Fumarase/aspartase (Central domain) 252 699 - -
Cla04g00900 705 SUPERFAMILY L-aspartase-like 14 704 IPR008948 GO:0003824
Cla04g00900 705 Gene3D - 6 251 IPR024083 -
Cla04g00900 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00900 Cla-Chr4:24005112 Cla07g01126 Cla-Chr7:28135308 0 dispersed
Cla04g00899 Cla-Chr4:24000234 Cla04g00900 Cla-Chr4:24005112 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00900 K10775 - csv:101219091 1223.38