Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00927 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCATATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAAGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTGGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACCAAGCGAGTCGAAACTTCCGAGTCTGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAACCTAAGTCCGCCGCCCTAATTGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGTTCTGGGATGGATTACACTGACGACATGTCGGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.62 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLHISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24255701 24259231 + ClCG04G009420.1 Cla04g00927 271155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00927 476 Gene3D - 77 419 IPR012334 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Cla04g00927 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Cla04g00927 476 PANTHER PECTATE LYASE 18-RELATED 27 437 IPR045032 GO:0030570
Cla04g00927 476 PANTHER PECTATE LYASE 12-RELATED 27 437 - -
Cla04g00927 476 Pfam Pectate lyase 158 341 IPR002022 -
Cla04g00927 476 SMART amb_all 152 349 IPR002022 -
Cla04g00927 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00927 Cla-Chr4:24255701 Cla05g02174 Cla-Chr5:33325321 0 dispersed
Cla04g00927 Cla-Chr4:24255701 Cla08g00798 Cla-Chr8:20385193 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00927 K01728 - csv:101203012 921.383