Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g00933 | ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTCGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA | 753 | 55.64 | MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24297743 | 24299336 | - | ClCG04G009480.1 | Cla04g00933 | 271161 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g00933 | 250 | Gene3D | Glycerol uptake facilitator protein. | 4 | 250 | IPR023271 | - | |
Cla04g00933 | 250 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Cla04g00933 | 250 | PANTHER | AQUAPORIN-8 | 1 | 250 | IPR034294 | - | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 146 | 164 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 179 | 201 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PRINTS | Major intrinsic protein family signature | 216 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | Pfam | Major intrinsic protein | 14 | 233 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | CDD | MIP | 21 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla04g00933 | 250 | PANTHER | AQUAPORIN TIP1-1 | 1 | 250 | - | - | |
Cla04g00933 | 250 | SUPERFAMILY | Aquaporin-like | 13 | 246 | IPR023271 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla04g00933 | Cla10g01892 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00933 | Cla-Chr4:24297743 | Cla08g01226 | Cla-Chr8:25167953 | 1.32E-19 | dispersed | |
Cla09g00167 | Cla-Chr9:1719283 | Cla04g00933 | Cla-Chr4:24297743 | 2.17E-92 | transposed | |
Cla09g01964 | Cla-Chr9:37240084 | Cla04g00933 | Cla-Chr4:24297743 | 2.86E-113 | transposed | |
Cla10g01892 | Cla-Chr10:34818950 | Cla04g00933 | Cla-Chr4:24297743 | 5.52E-118 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g00933 | K09873 | - | csv:101204225 | 463.766 |