Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00933 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTCGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA 753 55.64 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24297743 24299336 - ClCG04G009480.1 Cla04g00933 271161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00933 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cla04g00933 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cla04g00933 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cla04g00933 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla04g00933 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Cla04g00933 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00933 Cla10g01892 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00933 Cla-Chr4:24297743 Cla08g01226 Cla-Chr8:25167953 1.32E-19 dispersed
Cla09g00167 Cla-Chr9:1719283 Cla04g00933 Cla-Chr4:24297743 2.17E-92 transposed
Cla09g01964 Cla-Chr9:37240084 Cla04g00933 Cla-Chr4:24297743 2.86E-113 transposed
Cla10g01892 Cla-Chr10:34818950 Cla04g00933 Cla-Chr4:24297743 5.52E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00933 K09873 - csv:101204225 463.766