Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00937 ATGGCCAAGCTATTATCATTGTCAACGCAAGGCCTATGGGCATCTCTGCTAATCGTGTTGTCGCATGTAATTTCTCATTCAAACGCAGCAGCCTCATTGAGACGTCTCCCGCCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAGCAAGCCCACGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGACGACGTGGAAAAGGAAGGGTATGGAATGCAGACGGCGGCGCTTAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTTTGAAATCAAATGCATTGACGATCCACAGCGGTGCAAGCCCGGGCAGCCGTCGCTCATGGTAACCGGCACCAACCACTGCCCGCCGAACTACAACCTTGCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTTCTCAACATTGCCGAGTTCAAGGCTGGCATTGTTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCATTATTTCAACCAAGTGTTAGTGTGGAACGTAGGAGGAGCTGGAGATGTGAAAAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACAACCATGTCTCGATCGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGTTGGCGAGTCTCTCACCTTCAGGGTTCGAACCAGTGATGGCAAATTCTCCACTTCATGGCACATTGCTCCCACCAATTGGCAGTTTGGGGTTTACTCAATTAATTTCGCCATTAAAAACAATTGTCCGTTCCCAATTTGGCCGGGAGCTTTAACCGGTGCCGGCAACCAACTATCAACCACTGGCTTCGAATTACTCCCCGGATCAACAACAACGGTAACGACTTCTCCGCCGTGGTCCGGCAGATTTTGGGCAAGAACACTCTGTTCCACTGATGCAAGTGGAAAGTTCTCTTGCGCAACCGCCGATTGTGGCAGTGGCCAAGTCACATGTAACGGCGCCGGCGGAATTCCGCCAGCAAGCCTAGTGGAATTCACAATTGCGCCAAGCGGCGGCCAAGATTTCTTCGACATCAGCCTTGTCGATGGCTTCAATTTACCTGTTTCAGTGGCGCCGATTGGTGGTTCGGGTGGGGCGTGCCAAACGGTACTTTGTACAGGAAATGTAAATGCTGTTTGTCCACTGGAATTAGCCATTACAGATGAAGGTGGCGCAGTGATCGCTTGTAAAAGTGCTTGTATGGCCTTTAATCAGCCTGAATATTGCTGCAGTGGCGACCATAATCAGCCGGAAACTTGCCCGCCAACCAATTATTCAATGATTTTCAAGAATCAGTGTCCGCAAGCTTATAGCTACGCTTATGATGATAAGACAAGTACTTTTACTTGCACCGGTGGAGCTGATTATGCCATCACATTTTGTCCTTGA 1518 50.46 MAKLLSLSTQGLWASLLIVLSHVISHSNAAASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKQAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCIDDPQRCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKQGGIRFTITGNHYFNQVLVWNVGGAGDVKSVQVKGHRKLKWTTMSRSWGQKWVTNAMMVGESLTFRVRTSDGKFSTSWHIAPTNWQFGVYSINFAIKNNCPFPIWPGALTGAGNQLSTTGFELLPGSTTTVTTSPPWSGRFWARTLCSTDASGKFSCATADCGSGQVTCNGAGGIPPASLVEFTIAPSGGQDFFDISLVDGFNLPVSVAPIGGSGGACQTVLCTGNVNAVCPLELAITDEGGAVIACKSACMAFNQPEYCCSGDHNQPETCPPTNYSMIFKNQCPQAYSYAYDDKTSTFTCTGGADYAITFCP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24382578 24388730 + ClCG04G009520.1 Cla04g00937 271165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00937 505 CDD TLP-PA 286 504 - -
Cla04g00937 505 ProSitePatterns Thaumatin family signature. 345 361 IPR017949 -
Cla04g00937 505 SMART dpbb_1 98 185 IPR007112 -
Cla04g00937 505 PANTHER EXPANSIN-A15 39 281 IPR002963 GO:0009664
Cla04g00937 505 PANTHER EXPANSIN-A32 39 281 - -
Cla04g00937 505 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Cla04g00937 505 Gene3D - 51 191 IPR036908 -
Cla04g00937 505 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576
Cla04g00937 505 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Cla04g00937 505 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576
Cla04g00937 505 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Cla04g00937 505 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Cla04g00937 505 SMART tha2 286 505 IPR001938 -
Cla04g00937 505 Gene3D Thaumatin 287 505 IPR037176 -
Cla04g00937 505 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Cla04g00937 505 Pfam Lytic transglycolase 98 185 IPR009009 -
Cla04g00937 505 ProSiteProfiles Thaumatin family profile. 283 505 IPR001938 -
Cla04g00937 505 Gene3D - 195 286 IPR036749 -
Cla04g00937 505 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 120 131 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 134 144 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 153 170 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 170 183 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 194 206 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Cla04g00937 505 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
Cla04g00937 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
Cla04g00937 505 SUPERFAMILY PHL pollen allergen 192 281 IPR036749 -
Cla04g00937 505 SUPERFAMILY Osmotin, thaumatin-like protein 285 505 IPR037176 -
Cla04g00937 505 Pfam Thaumatin family 290 505 IPR001938 -
Cla04g00937 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 280 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00937 Cla10g01886 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00937 Cla-Chr4:24382578 Cla04g00803 Cla-Chr4:23068149 1.48E-105 dispersed
Cla08g00165 Cla-Chr8:3241311 Cla04g00937 Cla-Chr4:24382578 4.41E-110 transposed
Cla08g00248 Cla-Chr8:5083376 Cla04g00937 Cla-Chr4:24382578 1.32E-130 transposed
Cla10g01886 Cla-Chr10:34759509 Cla04g00937 Cla-Chr4:24382578 4.11E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00937 - - csv:101204720 472.626