Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00942 ATGCGCCTGTTCTTTTGCCTCATATCCGCCTTAGCCTCCGTCGTCGTCGTCGTCGTCACGGGCACGGCGGCTACCTCCCCCAACCATTTCCCTCTCTACAGAGCCTTCCCCCACTTTCCCACTCCCCACTTCCACTCCCTCACAGCTCGCGACCGCCTCCGCCATTCCCGCGTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCCTCCGATCCTTTCATCGGGCTTTATTTCACCAAAGTGAAGTTGGGAAATCCTGAGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGATATTTTGTGGGTCACTTGCAGTCCTTGCGACGGCTGTCCTCAATCAAGCGGACTTGGAGTTGAACTCAACTTATTTGATGCTACAAAGTCATCCTCTGCCAGGGTTGTTCCCTGCTCAGATCCAATATGTGCTGCAATTCCAACCACCACAGATCAATGCTTATCCCAGGCTGACCATTGCGGTTACACCTTCCATTATCGGGATAGAAGTGGGACGTCGGGCTTTTATGTTACTGATTTGATGCATTTTGACATACTTCTGGGGGAGTCAACGATTGCAAATTCTTCAGCCCCTATTGTGTTTGGGTGTAGCGTATATCAGTATGGGGATTTGACTCGGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTTATTTCACAATTGTCTTCTCGAGGAATCACACCTAAAGTATTCTCCCATTGTTTAAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATTTACAGAGTATTGCACTCAGCGGGCAATTTTTTGCAAGCCCCACCGTGTTTCCAATATCAAATGCAGGAGAAACTATCATTGATTCTGGAACAACTTTGGCTTACATTGTGGAAGAAGTCTACGATTGGATTATCAGTGTGATAACTTCTGCTGTTTCTCAATCAGCCACTCCCACAATTTCGAGGGGTAACCAATGTTATCGAGTCTCTACTAGTATAGCAGAAATATTTCCTGTGGTCAGCTTTAATTTTGAGGGTACTGCATCCATGGTGGTGACACCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCTTTATGGTGCATAGGTTTTCAGAAAGCTGAGGATGGAGTAAACATTTTAGGAGATCTTGTTTTGAAAGATAAGATCATTATCTACGACTTGGCTCGACAACGGATTGGATGGGCGAATTATGACTGTTCGTCGTCTGTAAATGTTTCTGTAACATCCGGGAAGGATGTGTTCATCAATGAAGGACAGCTGAGTTCCATTTTTGTTAATAACCCTGAGGGTTCTCTTGTCTTCATTATTTGTGCTAGCTGCATTCGCCTGGCCAATCTGTATTTTGAATGCTTGGTTGGGCTGCTTATCGCCAATCTGCGAAGAGCAAATGTTCCTGTGCCTGCATCTTACATCTGGCTTAATGCAGGCTCCTTTTCTGTGAGGTCGTCGTGCAGCTGCAACCCATAA 1578 46.2 MRLFFCLISALASVVVVVVTGTAATSPNHFPLYRAFPHFPTPHFHSLTARDRLRHSRVLRRLAGGIVNFSVKGSSDPFIGLYFTKVKLGNPEREFNVQIDTGSDILWVTCSPCDGCPQSSGLGVELNLFDATKSSSARVVPCSDPICAAIPTTTDQCLSQADHCGYTFHYRDRSGTSGFYVTDLMHFDILLGESTIANSSAPIVFGCSVYQYGDLTRATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIALSGQFFASPTVFPISNAGETIIDSGTTLAYIVEEVYDWIISVITSAVSQSATPTISRGNQCYRVSTSIAEIFPVVSFNFEGTASMVVTPEEYLQFDSIEPALWCIGFQKAEDGVNILGDLVLKDKIIIYDLARQRIGWANYDCSSSVNVSVTSGKDVFINEGQLSSIFVNNPEGSLVFIICASCIRLANLYFECLVGLLIANLRRANVPVPASYIWLNAGSFSVRSSCSCNP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24478256 24483322 + ClCG04G009580.1 Cla04g00942 271170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00942 525 Gene3D Acid Proteases 66 267 IPR021109 -
Cla04g00942 525 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 455 - -
Cla04g00942 525 Gene3D Acid Proteases 268 443 IPR021109 -
Cla04g00942 525 ProSiteProfiles Peptidase family A1 domain profile. 82 432 IPR033121 -
Cla04g00942 525 Pfam Xylanase inhibitor C-terminal 284 432 IPR032799 -
Cla04g00942 525 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Cla04g00942 525 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Cla04g00942 525 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Cla04g00942 525 PANTHER ASPARTYL PROTEASES 5 455 IPR001461 GO:0004190|GO:0006508
Cla04g00942 525 Pfam Xylanase inhibitor N-terminal 82 266 IPR032861 -
Cla04g00942 525 CDD pepsin_A_like_plant 82 436 IPR034161 -
Cla04g00942 525 SUPERFAMILY Acid proteases 78 440 IPR021109 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00942 Cla10g01863 CCT
Cla04g00942 Cla10g01863 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00942 Cla-Chr4:24478256 Cla08g00452 Cla-Chr8:13771205 1.72E-90 dispersed
Cla08g00605 Cla-Chr8:17966673 Cla04g00942 Cla-Chr4:24478256 6.90E-35 dispersed
Cla10g00052 Cla-Chr10:576075 Cla04g00942 Cla-Chr4:24478256 4.77E-32 dispersed
Cla11g01544 Cla-Chr11:29141075 Cla04g00942 Cla-Chr4:24478256 9.28E-23 dispersed
Cla10g01863 Cla-Chr10:34538337 Cla04g00942 Cla-Chr4:24478256 5.18E-166 wgd
Cla02g02117 Cla-Chr2:36188064 Cla04g00942 Cla-Chr4:24478256 2.31E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00942 - - csv:101205203 806.979