Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00945 ATGGAAGCTCTTCTTCTCAACGCACCCACTTCACATCCAATTGCTCGAAAATCTCTCCTTCCATCCCAACCCTCCTTCTTCAATGGAACCTCCATTCCTATTGATGACAATCGTAGCATAATTAGACTTCCCAGGCCTCCATTCATCCAAGCCACGCTTTCAAAACACACCGTTGAGATCCCTCCCAATTCTGTATCCAACACTTCGGTTGCGACTCTTGGAGATGCATTGGCGGCTACACCTTTGCCTCCTCGCAAAAGGGTGTCGGCCGATTCGCTACAGTTCCCGCCTGGCTATCTCGGTGCTGTTCCGGACCGCTCCGGTTCTGATGATGATGCTGAGGGTAGTCTCAACGCCATGGAGTATTTGACCAGAATCTTGGGTTCGAAGGTGTACGATGTGGCTATTGAATCGCCGTTGCAGCTTGCGCCGACGTTGTCTGAACGTTTGGGGGTGAATATCTGGCTCAAGAGGGAGGACTTGCAGCCCGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAAAGAACAGTTGGAAAAAGGAGTTATATGCTCTTCAGCTGGAAATCATGCTCAAGGGGTTGCATTAGCGGCTAAGCGATTAAGATGTAATGCTGTAATTGCTATGCCTGTTACTACCCCTGAAATTAAGTGGCAATCAGTTCAAAAGTTGGGTGCAACTGTTGTTCTTGTTGGAGATTCATATGATGAGGCACAGGCATATGCTAAAAAGCGGAGTGTAGAGGAAGGCCGCACGTTCATACCACCTTTTGATCACCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATGAAGAACCCAGTGCATGCAATTTTTGTGCCTGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCCGAGGTAAAGATTATTGGGGTGGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCCAAAGAGTAATATTGGACAAGGCTGGAGGTTTTGCTGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACTTTTCGTCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGAGATTCTATCTGTGCCTCAATAAAGGATATGTTTGAGGAGAAGAGAAGCATCTTGGAACCTGCAGGCGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAATATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACTGAACTTGCCAATGTTGGTCGTGAACAAGAGGCTGTGCTCGCAACTATATTGCCGGAAATACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGGCCTATGAATATTACAGAATTCAAGTATAGATATAGTTCTGAAAAGGAAGCGGTTGTTCTTTATAGTGTCGGTATGCATATGCCTTCTGAACTAGAAGAAATGAAGAATCGGATGAAATCGTCTCAGCTTGAAACTTATAATCTCACAAATAATGATCTTGTAAAGGATCACCTGCGTTACTTGATGGGAGGCAAATCAAATGTTGAAAATGAAGTTCTATGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTTAGTCCTCGATGGAACATTAGTTTGTTTCACTATCATGGGAAGGGTGAAACTGGTGCAAATATCTTAGTTGGGCTTCAGATTGAGAAATCGGAAATGGGTGAATTCCATGAACGTGCTCGGAGGGTCGGATACGATTACGTTGTGACCAACTCACAAGGCCACAAGTCTCTTGAGTTAATCCAAATGTCAACTTATTATCAACTCAACGAAAGCGGTTTTAAATCCTGGAGTGGAGATTCATTTCTTGAAGAGATAACTTCATTCTGCAAACTTAGTTGTTTGTGTGTCTGTTTTTTCTCTTGA 1980 43.89 MEALLLNAPTSHPIARKSLLPSQPSFFNGTSIPIDDNRSIIRLPRPPFIQATLSKHTVEIPPNSVSNTSVATLGDALAATPLPPRKRVSADSLQFPPGYLGAVPDRSGSDDDAEGSLNAMEYLTRILGSKVYDVAIESPLQLAPTLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLRCNAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSVEEGRTFIPPFDHPDVIAGQGTVGMEIVRQMKNPVHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRVILDKAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDSICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREQEAVLATILPEIPGSFKKFCELVGPMNITEFKYRYSSEKEAVVLYSVGMHMPSELEEMKNRMKSSQLETYNLTNNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYHGKGETGANILVGLQIEKSEMGEFHERARRVGYDYVVTNSQGHKSLELIQMSTYYQLNESGFKSWSGDSFLEEITSFCKLSCLCVCFFS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24536194 24541855 + ClCG04G009610.2 Cla04g00945 271173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00945 659 Gene3D - 171 262 IPR036052 -
Cla04g00945 659 CDD ACT_ThrD-I_2 538 606 - -
Cla04g00945 659 ProSiteProfiles ACT-like domain profile. 539 610 IPR001721 -
Cla04g00945 659 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 121 607 IPR005787 GO:0004794|GO:0009097
Cla04g00945 659 ProSiteProfiles ACT-like domain profile. 446 517 IPR001721 -
Cla04g00945 659 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 120 473 IPR036052 -
Cla04g00945 659 Gene3D Biosynthetic Threonine Deaminase; Domain 3 445 616 IPR038110 -
Cla04g00945 659 CDD Thr-dehyd 123 427 - -
Cla04g00945 659 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 63 609 - -
Cla04g00945 659 CDD ACT_ThrD-I_1 445 528 - -
Cla04g00945 659 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 159 172 IPR000634 GO:0006520|GO:0030170
Cla04g00945 659 PANTHER THREONINE DEHYDRATASE 63 609 - -
Cla04g00945 659 SUPERFAMILY ACT-like 526 610 IPR045865 -
Cla04g00945 659 Pfam C-terminal regulatory domain of Threonine dehydratase 530 609 IPR001721 -
Cla04g00945 659 Pfam C-terminal regulatory domain of Threonine dehydratase 436 525 IPR001721 -
Cla04g00945 659 Gene3D - 139 417 IPR036052 -
Cla04g00945 659 Pfam Pyridoxal-phosphate dependent enzyme 134 423 IPR001926 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00943 Cla-Chr4:24493568 Cla04g00945 Cla-Chr4:24536194 7.91E-148 dispersed
Cla04g00945 Cla-Chr4:24536194 Cla01g00275 Cla-Chr1:2893647 8.64E-36 dispersed
Cla04g00944 Cla-Chr4:24520330 Cla04g00945 Cla-Chr4:24536194 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00945 K01754 - csv:101205909 1105.51