Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00946 ATGCAGCTTCCACTCAGTGGCTTCTTGCTCCCCTTCAGCCTCCTAGCTCTCATTTTTCCAGTGGCTACCGGTGATCCTCTTGTGCCTGCACTCTGCATCTTCGGGGACTCGGTCGTCGATGTCGGAAATAACAACAATCTTCTAACAGTTGTCAAGGCTAACTTTCCTCCTTATGGAAGAGACTTTGTTACTCATACACCAACAGGAAGGTTTTGCAATGGAAAGCTTGCCACTGATTTTACCGCTGAATTCCTTGGATTTTCTTCATATCCTCCTGCATATTTGAGCCAAGATGCCACTGGAAACAAGCTTTTAACAGGAGCCAACTTTGCTTCTGCTGCTTCTGGCTTTTATGATGGCACAGCTCAGCTCTATCATGCAGTTTCATTAACCCAGCAGTTGAATTATTACAAGGAATATCAAAGCAAAGTTGTGAACATGGTGGGAACAGAGAAAGCCAATGCCATATTCTCTGGTGCAATTCACCTTCTTAGTGCAGGCAGCAGTGATTTCATTCAGAATTACTATGTTAATCCTCTTCTTTACAGAACATACTCACCACAGCAATTCTCTGACATTCTCATTACATCTTTCTCCAACTTCATTCAGAACCTATATGGAATGGGAGCAAGGAGAATAGGGGTGACAGGGTTACCTCCATTGGGTTGCTTGCCAGCAGCTATCACCCTCTTTGGTTCTGGTAGCAACCAATGCATCCAAAGGTTAAATCAAGATGCCATTGCATTCAACACTAAGCTGCAAAGCACATCTCAGAGTTTGCAGAACAGATTCTCTGATCTCAAGCTTGTTGCCTTTGATATTTATCAACCTCTCTTGAATATGGTCTCGAAGCCTGCAGAAAATGGGTTTTTTGAGTCAAGAAGGGCTTGTTGTGGAACAGGAACAGTAGAGACTTCCTTCCTTTGCAACAGTAGATCAATTGGAACATGCTCAAATGCCACGGGCTATGTTTTCTGGGACGGTTTCCATCCAACCGAAGCCGCAAATCAAGTGTTGGCGGGGGATTTACTTACTCAGGGATTCAGCCTCATTTGA 1056 44.13 MQLPLSGFLLPFSLLALIFPVATGDPLVPALCIFGDSVVDVGNNNNLLTVVKANFPPYGRDFVTHTPTGRFCNGKLATDFTAEFLGFSSYPPAYLSQDATGNKLLTGANFASAASGFYDGTAQLYHAVSLTQQLNYYKEYQSKVVNMVGTEKANAIFSGAIHLLSAGSSDFIQNYYVNPLLYRTYSPQQFSDILITSFSNFIQNLYGMGARRIGVTGLPPLGCLPAAITLFGSGSNQCIQRLNQDAIAFNTKLQSTSQSLQNRFSDLKLVAFDIYQPLLNMVSKPAENGFFESRRACCGTGTVETSFLCNSRSIGTCSNATGYVFWDGFHPTEAANQVLAGDLLTQGFSLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24542727 24545038 + ClCG04G009620.1 Cla04g00946 271174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00946 351 CDD SGNH_plant_lipase_like 29 345 IPR035669 -
Cla04g00946 351 Gene3D SGNH hydrolase 23 347 IPR036514 -
Cla04g00946 351 SUPERFAMILY SGNH hydrolase 154 342 - -
Cla04g00946 351 PANTHER GDSL ESTERASE/LIPASE EXL3 10 350 - -
Cla04g00946 351 Pfam GDSL-like Lipase/Acylhydrolase 33 340 IPR001087 GO:0016788
Cla04g00946 351 PANTHER GDSL-MOTIF LIPASE 10 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00946 Cla-Chr4:24542727 Cla07g01281 Cla-Chr7:29900477 3.34E-144 dispersed
Cla02g02119 Cla-Chr2:36218462 Cla04g00946 Cla-Chr4:24542727 4.94E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00946 - - csv:101206148 644.425