Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00947 ATGGACGCCATTTCTGCACTTTCTCTTCTTCCTCCCACAATCTTCTTTCGCTTTCCTTCTATGCCCACCATTCCTTCTCCTTCACCGCCACTTCTATCTAAAACTTCTTCATCTCTCTGTAACCCAAACCCCTCTCACCGCCCCTTCAATTCCACTTCTCCCACCCAATTCCTTATTTGCCCACAACCCCCCGTCTCTATTTCAGAACGCCTTTTCGCTTCACGCCCTTTAAGTACCTCTCTTTCTCCAATTGCTTCCGCCTTCGATTTGCTCCGCCTATCCACTCGCTACGGTGACCCTGACCTTGCCAGAGCTGTTCATGCTCGCTTTCTCAAGCTCGAGGAAGATATCTATCTGGGTAATGCTCTAATTGCGGCTTATCTCAAATTGGGACTTGTTCGTGATGCTGATAAAGTCTTTTCTGGCCTTTCGTGTCCTAATGTTGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAAGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCAGGTATTGAGCCGAATGAATATACTTTTGTTGCAATTTTGACTGCTTGCATTCGAAATATGGATTATCTGTTAGGTTCTCAAGTTCATGGTATTGTCGTCAAATTGGGGTTCCTGAATTGTGTTTTCATTTGCAATGCACTTATGGGATTCTATTGTAAGTGTGGGTTTTTGGAACTTGTACTTAGATTGTTCGACGAAATGCCTGAGAGAGACATCACTTCGTGGAATACTGTTATCTCGAGTTTGGTGAAGGAGTTCAAGTATGATGAAGCGTTTGATTACTTTCGTGATATGCAGCTATGTAAGGGGCTCAGAGTGGATCATTTCTCTCTTTCTACTCTATTGACTGCTTGCGCTGACAGTGTTAAGTCAATGAGAGGCCAACAACTTCACGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGCGTGAGCAATTCCCTTATTGGGTTCTATACCAAATGTGGGAGTGTAAACGATGTAATGGATCTGTTTGAGACAATGCCAATAAGAGATGTTATTACTTGGACAGGTATGATTACATCATACATGGAATTCGGGAAGTTGGATTCGGCAGTTGAAGTCTTTAATAAGATGCCAGAGAGGAATTGTATCTCTTATAATGCAGTTTTGGCAGGGCTCTCAAGGAATGGCGACGGGTCAAGAGCTCTGGAACTTTTCATTGAAATGTTGGAGGAGGGCATGGAAATATCAGATTGTACATTGACTAGCATCATCAATGCTTGTGGGTTGCTCAAGACTTTTAAAGTTAGCCAGCAGATTCAAGGCTTCATCATAAAGTTCGGTATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTGTGGAAGGATGGAGAATGCTGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTATACTGCAATGCTAACATCAATGGTTTGTGGGTATGCTCGAAATGGACAACTTAATGAAGCAATCTCTCTCTTCCACTCTGGTCAATCTGAAGGAGCCATTGTTATGGATGAAGTTGTGTCGACATCAATACTCTCTCTTTGTGGGAGCATAGGCTTTCATGAGATGGGAAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGATACAGGGGTAGGGAATGCAACAGTGAGCATGTACTCAAAGTGTTGGAATATGGATGATGCCGTCCGTGTATTCAATACAATGGACATGCAAGACATAGTCTCCTGGAATGGTTTAGTTGCTGGGCATATGCTTCATAGGCAGGGTGATAATGCCTTGGAAATCTGGAAGAAGATGGAGAAAGCAGGAATAAAACCTGACAATATTACGTTTGTTTTGATTATTTCAGCCTACAAACACACTGAATTGAATTTAGTTGATAGTTGTCGTAGTTTATTTGTCTCTATGGAAACTAAATACAATATCAAACCCACTTCAGAGCATTATGCCTCCTTTATTAGTGTTTTGGGTCGTTGGGGTCTTCTTGAAGAAGCTGAAGAAACAATCAGGAAGATGCCTTTTGAACCGAATGTTTATGTCTGGCGTGCTTTGCTCGACAGTTGTAGAATCAATAAAAATGAAAGGCTGGAAAAACTTGCTGCAAAATACATACTGGCATTGGAACCAAAAGATCCGTTTACTTACATACTTAAATCGAATCTATATTCTGCATCAGGGAGATGGCATTATTCTGAAAAGGTGAGAGAGGATATGCGAGAGAAAGGGTTCCGGAAACACCCAAGTCAAAGTTGGATCATTCATGAGAACAAAATTCATTCATTTTATGCCAGAGACAAGTCCCATCCTCAGGTAAAAGACATTTACAGTGGACTAGAGATACTAATCTTAGAATGTTTCAAAGCTGGTTATGTTCCAGACACAAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCAAAAGAAGGAATTCTTGTTCTATCATAGTGGAAAATTAGCTGCAACTTTCGGGATTCTAATGACCAAACCGGGAAAGCCTATCCAAATTGTGAAGAATGTCCGTTTGTGTGGGGATTGCCATACCTTCTTGAAATATGTTTCTATTATCACCAGAAGGAAAATATTTCTCAGGGATACTTCGGGGTTTCATTGCTTTATAGATGGCCAATGCTCATGTACAGATTACTGGTAA 2688 41.29 MDAISALSLLPPTIFFRFPSMPTIPSPSPPLLSKTSSSLCNPNPSHRPFNSTSPTQFLICPQPPVSISERLFASRPLSTSLSPIASAFDLLRLSTRYGDPDLARAVHARFLKLEEDIYLGNALIAAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSNREDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYLLGSQVHGIVVKLGFLNCVFICNALMGFYCKCGFLELVLRLFDEMPERDITSWNTVISSLVKEFKYDEAFDYFRDMQLCKGLRVDHFSLSTLLTACADSVKSMRGQQLHALALKVGLESHLSVSNSLIGFYTKCGSVNDVMDLFETMPIRDVITWTGMITSYMEFGKLDSAVEVFNKMPERNCISYNAVLAGLSRNGDGSRALELFIEMLEEGMEISDCTLTSIINACGLLKTFKVSQQIQGFIIKFGILSNSCIETALVDMYTRCGRMENAEKMFHQRSLENDYTAMLTSMVCGYARNGQLNEAISLFHSGQSEGAIVMDEVVSTSILSLCGSIGFHEMGKQMHCHALKSGLITDTGVGNATVSMYSKCWNMDDAVRVFNTMDMQDIVSWNGLVAGHMLHRQGDNALEIWKKMEKAGIKPDNITFVLIISAYKHTELNLVDSCRSLFVSMETKYNIKPTSEHYASFISVLGRWGLLEEAEETIRKMPFEPNVYVWRALLDSCRINKNERLEKLAAKYILALEPKDPFTYILKSNLYSASGRWHYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDKSHPQVKDIYSGLEILILECFKAGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHTFLKYVSIITRRKIFLRDTSGFHCFIDGQCSCTDYW 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24548555 24551242 + ClCG04G009630.1 Cla04g00947 271175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00947 895 MobiDBLite consensus disorder prediction 27 50 - -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Cla04g00947 895 Pfam E motif 710 766 IPR046848 -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Cla04g00947 895 Pfam E+ motif 772 793 IPR046849 -
Cla04g00947 895 Pfam DYW family of nucleic acid deaminases 803 895 IPR032867 GO:0008270
Cla04g00947 895 PANTHER OS07G0172600 PROTEIN 490 881 - -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Cla04g00947 895 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 421 - -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Cla04g00947 895 MobiDBLite consensus disorder prediction 30 50 - -
Cla04g00947 895 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 490 881 - -
Cla04g00947 895 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 417 479 - -
Cla04g00947 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 380 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 121 141 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 324 347 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 563 583 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 488 511 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 456 476 IPR002885 -
Cla04g00947 895 Pfam PPR repeat 663 686 IPR002885 -
Cla04g00947 895 Pfam PPR repeat family 146 194 IPR002885 -
Cla04g00947 895 Pfam PPR repeat family 381 427 IPR002885 -
Cla04g00947 895 Pfam PPR repeat family 586 632 IPR002885 -
Cla04g00947 895 Pfam PPR repeat family 248 296 IPR002885 -
Cla04g00947 895 PANTHER OS07G0172600 PROTEIN 41 421 - -
Cla04g00947 895 Gene3D Tetratricopeptide repeat domain 637 789 IPR011990 GO:0005515
Cla04g00947 895 Gene3D Tetratricopeptide repeat domain 484 636 IPR011990 GO:0005515
Cla04g00947 895 Gene3D Tetratricopeptide repeat domain 72 204 IPR011990 GO:0005515
Cla04g00947 895 Gene3D Tetratricopeptide repeat domain 307 444 IPR011990 GO:0005515
Cla04g00947 895 Gene3D Tetratricopeptide repeat domain 205 306 IPR011990 GO:0005515
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 251 283 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 220 249 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 588 621 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 488 510 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 149 183 IPR002885 -
Cla04g00947 895 TIGRFAM PPR: pentatricopeptide repeat domain 352 382 IPR002885 -
Cla04g00947 895 PANTHER OS07G0172600 PROTEIN 417 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00947 Cla-Chr4:24548555 Cla05g00861 Cla-Chr5:8519771 4.80E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00947 - - csv:101205681 1602.03