Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00950 ATGGCCACTTCCGGGTTTCTTCTTTACCTTCTTCCTGCCTCTTCCATCGCCGTTCTCTCTGTTCTCTACCTCTCTAACTCTCCTTCTTCTTCCTCCTCCTCCCCCGCCCTCTCCGCCTCTCTCTCCACCGACAAAACATGGCCGGATTTGGAGCTGAGTTGGAGACTTGTGGCGGCGACGGTGATCGGATTTCTCGGCTCTGCTTGCGGGACCGTTGGAGGAGTCGGCGGCGGCGGCATTTTTGTCCCTATGCTTACTTTGATTATTGGGTTCGACACCAAATCTGCTGCTGCCATTTCCAAATGTATGATAATGGGGGCTTCTACATCATCGGTTTGGTACAATTTAAGAGTGGCTCATCCGACCAAGGATGTGCCGATTATAGATCATGATTTAGCTTTGTTGTTTCAGCCTATGTTGATGCTTGGAATCACCGTTGGTGTTGCCCTTAGCGTTGTTTTTCCCTACTGGCTTATCACTGTGCTCATCATTATTCTCTTTATTGGGACTTCCTCCAGGTCTTTCTTCAAGGGCATTGAGATGTGGAAAGAAGAAACTATTCTCAAGAAAGAATTTGCCAAACAATGTGAAACTGTTGTGAATTCTCATGGCGAACTATTGATTGATGTAGAGTATGACCCACTGATTCCCAAAGAACAGAAAACAGCACTGGAATTAATGTGCTTCAATCTTAGGTGGAAAAGGACCTCCATTTTGGTAGTTGTTTGGATTTCTTTCCTCATACTTCAAGTTGTGAAGAATGATGTAGCAGTTTGTAGCAATTGGTATTGGCTCATCTTCTCCTTACAGTTCCCCATAGCAATTGGACTGTTTGGTTATGAAGCAAGAAAGCTATACAAAGAACACAAGAAGAGGATGGAGACAGGGAACTTAGAACACATTTGTGAGGCTTCAATTGGATGGACTGGCACACACCTTGCCTTTTGTGCACTCTGTGGCATTGTTGGAGGCACTGTTGGAGGCCTTTTGGGTTCTGGTGGTGGCTTTGTTTTAGGCCCTTTGCTCTTGGAAATTGGTGTTGTCCCTCAAGTTGCTAGTGCCACAGCAACTTTTGTTATGATGTTCTCCTCTTCCTTATCTGTTGTTGAGTTCTACTTGCTCAACAGGTTTCCCATTCCATATGCTCTGTACCTTACATCGGTGTCGGTTCTCGCCGGGTTCTGGGGGCAGTTCTTTGTTAGAAAAATGATCACCATTCTAAGGAGAGCCTCACTCATTGTGTTTATCCTATCTGGTGTCATCTTTGCTAGTGCCATCACCATGGGCATTGTAGGAACAACGAAAAGTATAACAATGATACAGAATCATGAGTTCATGGGGTTCTTAGATTTCTGCAGCAGTGGGTGA 1368 45.25 MATSGFLLYLLPASSIAVLSVLYLSNSPSSSSSSPALSASLSTDKTWPDLELSWRLVAATVIGFLGSACGTVGGVGGGGIFVPMLTLIIGFDTKSAAAISKCMIMGASTSSVWYNLRVAHPTKDVPIIDHDLALLFQPMLMLGITVGVALSVVFPYWLITVLIIILFIGTSSRSFFKGIEMWKEETILKKEFAKQCETVVNSHGELLIDVEYDPLIPKEQKTALELMCFNLRWKRTSILVVVWISFLILQVVKNDVAVCSNWYWLIFSLQFPIAIGLFGYEARKLYKEHKKRMETGNLEHICEASIGWTGTHLAFCALCGIVGGTVGGLLGSGGGFVLGPLLLEIGVVPQVASATATFVMMFSSSLSVVEFYLLNRFPIPYALYLTSVSVLAGFWGQFFVRKMITILRRASLIVFILSGVIFASAITMGIVGTTKSITMIQNHEFMGFLDFCSSG 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24575404 24579341 + ClCG04G009650.1 Cla04g00950 271178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00950 455 PANTHER CEREBLON 2 453 - -
Cla04g00950 455 Pfam Sulfite exporter TauE/SafE 61 178 IPR002781 GO:0016021
Cla04g00950 455 Pfam Sulfite exporter TauE/SafE 308 420 IPR002781 GO:0016021
Cla04g00950 455 PANTHER TRANSMEMBRANE PROTEIN TAUE-RELATED 2 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00950 - - - bhj:120072699 775.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00478 Cla-Chr3:5319200 Cla04g00950 Cla-Chr4:24575404 3.60E-35 dispersed
Cla04g00950 Cla-Chr4:24575404 Cla11g01373 Cla-Chr11:27257873 1.28E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1070 . . . Bda03g00694 . . . . . . . . Car03g01070 . Sed14g0348 Cpe10g00256 . Bhi03g01491 Tan03g1155 Cmetu08g1138 . Hepe04g0993 . . Cla04g00950 Cam04g0989 Cec04g1116 Cco04g1173 Clacu04g1018 Cmu04g1004 Cre04g1060 Cone3ag0211 Cone10ag0193 . . Lsi01g01265 Csa06g02643 Chy08g00901 . . . . . . . . . . Cmo03g01181 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g01241
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009733 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00950 Cla_Chr04 FPKM 0.0 0.0 0.124345 0.09116 4.19397 5.6727 3.197608 0.149233 0.063235 0.066624