Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00951 ATGGACACTAAGAACCAAGAAGAACATCACACCGACACCAGCGATTACACGTCGGAGGACGAGGGAAGTGAAGATTACCGCCGTGGAGGCTACCACGCTGTTCGAATTGGCGACACTTTCAAGAATGGTAGATATGTGGTGCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACCGTCTGGCTCGCCTGGGACACCCAATCCCCCCGATATGTAGCTCTCAAAGTACAGAAGAGTGCTCAGCACTACACTGAGGCAGCCATGGATGAGATTACAATCTTGAAACAGATTGCAGAGGGAGACCCTGATGATAAAAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGACCTAATGGGCAACATGTTTGTATGATTTTTGAGTATTTGGGGGATAATCTGTTGACACTAATCAAGTACACTGACTACCGTGGATTACCAATTCATATGGTTAAGGAGATATGTTTTCATATATTGGTTGGCTTGGATTACTTGCATAAACAGCTTTCTATTATACATACTGATTTGAAGCCTGAAAATATTTTGTTACTCTCAATGATTGACCCATCAAAGGATCCTAGAAAATCTGGTATCCCTCTCATTCTTCCAACTAACAAGGACAAGGCTACATTTGAGTCTGGGATTTCAAAAGACATAAAATCTTCAAATGGAGATTTTGCTAAACACCATAAGAGAAACATTCGAAGAAAAGCAAAGCAAGCTGCTCAGGGGTGTGTGGAGAAGGAAATGACTGCGGAGGCTGAGGCTAATCCAGAAACATCTTATACTGTTGAATCATCTCCAAATGCAAAGTCGAGCACAGGGGCAACTGAGGAAAGGCAATCTAGTTTTCTCAATACAAACAGATCGTCTGATGCTGATGGAGGAAAGGGCAGCGGGGAAGAAAATCAAGTTGCCAAGAAAGGGAGTCGATTGAGAAAGAAGATGTTATTGGCTTCGGTGGATCTGAATTGCAAGTTGGTTGACTTTGGAAATGCATGTTGGACATACAAACAATTTACAAATGACATTCAGACTAGACAGTATAGGTGCCCAGAAGTTATCCTCGGATCAAAATACTCTACATCAGCAGATCTTTGGTCCTTTGCATGTATTTGTTTTGAGCTTGCAACTGGTGATGTGCTCTTTGATCCGCACAGTGGTGACAACTTCGACAGAGATGAGGACCACTTAGCTTTGATGATGGAACTTCTTGGAATGATGCCACGCAAGATTGCTTTCGGTGGTTGCTATTCTCGAGATTTCTTCAATCGATATGGAAATTTGAGGCACATCCGAAGGTTACGTTTCTGGCCACTAAACAAAGTTCTCATGGAGAAGTATGATTTCAACGAACAAGATGCAAATCAAATGGCAGAATTTCTAGTACCAATTCTTGATTTTGTTCCTGAGAACCGACCCTCTGCAGGCCAATGCCTTCTCCATCCATGGATGAATGCTGGGCCTCGACTGTTGGAACCATCCCTGAATCTCGCGACTTCTGAGGAGAAGAAGAAGGAGAAGGAAGATATGGAAGAAATGGAGGTTGGAATGAGAAAAATTGCCATTAGTTCAGATTCTGAACAAGCTAATGATTCCCAGGAGTCCAAGTCCAAAACCAGCAAAACCAATTCCTGA 1641 43.02 MDTKNQEEHHTDTSDYTSEDEGSEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQSPRYVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMIFEYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGIPLILPTNKDKATFESGISKDIKSSNGDFAKHHKRNIRRKAKQAAQGCVEKEMTAEAEANPETSYTVESSPNAKSSTGATEERQSSFLNTNRSSDADGGKGSGEENQVAKKGSRLRKKMLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGCYSRDFFNRYGNLRHIRRLRFWPLNKVLMEKYDFNEQDANQMAEFLVPILDFVPENRPSAGQCLLHPWMNAGPRLLEPSLNLATSEEKKKEKEDMEEMEVGMRKIAISSDSEQANDSQESKSKTSKTNS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24579591 24582886 - ClCG04G009660.1 Cla04g00951 271179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00951 546 SUPERFAMILY Protein kinase-like (PK-like) 40 493 IPR011009 -
Cla04g00951 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cla04g00951 546 ProSiteProfiles Protein kinase domain profile. 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00951 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 544 - -
Cla04g00951 546 SMART serkin_6 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00951 546 MobiDBLite consensus disorder prediction 496 515 - -
Cla04g00951 546 MobiDBLite consensus disorder prediction 222 308 - -
Cla04g00951 546 Gene3D Transferase(Phosphotransferase) domain 1 128 487 - -
Cla04g00951 546 PANTHER SERINE KINASE-LIKE PROTEIN 12 544 - -
Cla04g00951 546 MobiDBLite consensus disorder prediction 520 546 - -
Cla04g00951 546 MobiDBLite consensus disorder prediction 500 515 - -
Cla04g00951 546 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Cla04g00951 546 MobiDBLite consensus disorder prediction 1 26 - -
Cla04g00951 546 Pfam Protein kinase domain 45 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00951 546 Pfam Protein kinase domain 319 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00951 546 MobiDBLite consensus disorder prediction 257 295 - -
Cla04g00951 546 Gene3D Phosphorylase Kinase; domain 1 21 127 - -
Cla04g00951 546 MobiDBLite consensus disorder prediction 525 546 - -
Cla04g00951 546 CDD STKc_SRPK 34 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02118 Cla-Chr2:36207765 Cla04g00951 Cla-Chr4:24579591 0 dispersed
Cla04g00951 Cla-Chr4:24579591 Cla08g01240 Cla-Chr8:25343066 1.22E-14 dispersed
Cla04g00951 Cla-Chr4:24579591 Cla01g02039 Cla-Chr1:34902738 1.07E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80505 PF00069 Pkinase 1.00E-18 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00951 K08832 - csv:101206384 1043.11