Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00952 ATGGTGAATCAAATGACTTATGTTTCGTTTTTAGGGTTTCGGCGACCACGAAGAAACGGAGGAGTAACAACTGCAGCCGCCACCATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGAGCGAAGATATATCCGGGTAAAGGAATCAGATTTGTTCGTGCAGATTCACAGGTTTTCCTGTTTGCTAACTCCAAATGCAAGAGGTACTTCCATAACAGATTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCGCGAAGAAACCTTACTCAAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCTAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGCAAAGCTAACGTTTCTAGGGGAGCTGCTCCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA 579 46.8 MVNQMTYVSFLGFRRPRRNGGVTTAAATMVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQGKANVSRGAAPKGPKLGGGGGKR 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24587122 24589302 + ClCG04G009670.1 Cla04g00952 271180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00952 192 CDD Ribosomal_L24e_L24 31 84 IPR000988 -
Cla04g00952 192 PANTHER 60S RIBOSOMAL PROTEIN L24 26 192 - -
Cla04g00952 192 ProSitePatterns Ribosomal protein L24e signature. 38 55 IPR023442 -
Cla04g00952 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 34 86 - -
Cla04g00952 192 PANTHER 60S RIBOSOMAL PROTEIN L24 26 192 IPR000988 -
Cla04g00952 192 SMART 4TRASH 36 74 IPR011017 -
Cla04g00952 192 Coils Coil 140 167 - -
Cla04g00952 192 Gene3D Ribosomal protein L24e 31 92 IPR038630 -
Cla04g00952 192 MobiDBLite consensus disorder prediction 146 192 - -
Cla04g00952 192 Gene3D - 97 173 - -
Cla04g00952 192 Pfam Ribosomal protein L24e 32 95 IPR000988 -
Cla04g00952 192 MobiDBLite consensus disorder prediction 146 164 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00952 Cla10g01858 CCT
Cla04g00952 Cla10g01858 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00952 Cla-Chr4:24587122 Cla10g01834 Cla-Chr10:34308852 4.29E-10 dispersed
Cla05g01943 Cla-Chr5:31267283 Cla04g00952 Cla-Chr4:24587122 2.36E-07 transposed
Cla10g01858 Cla-Chr10:34490170 Cla04g00952 Cla-Chr4:24587122 6.97E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00952 K02896 - csv:101206866 249.595