Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00953 ATGGAGTGGAATAATGGCAAAACTTTCACTCCTAACTTTGTTTCTCCACCACCACATTCTTCTTCCTCTGCTTTGCTCTACAACTGCAACAACTACAACTGCAATTTCGATCACTTTCCTGAAGTGATTGATATTCTTAACCTTTCAGTTCAATCAGTGATGGAGACGACGACGACAAAGAAAGTGGCGGTGGAAGGTGAACAAAGTATGGTTGGAGGAGTGGATCAAAAGAAGAAGAGATTGAGTCAGGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTATCAAAGGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATAATATCTCTAAGGAAAAACATAACCTTCAACAAGAGGTGATAAAACTAAGAAGCATGCTAAGAGAACAAGCAACGAGGAATCAAGGGTCGATAGGTTGCACGGATGTCTCCGGGGAAGAGACGACGGTGGAATGCACATCGGTTGAGATTCTGAGCTGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTACTCACCTGCCTTCTTATCCTTAG 702 42.17 MEWNNGKTFTPNFVSPPPHSSSSALLYNCNNYNCNFDHFPEVIDILNLSVQSVMETTTTKKVAVEGEQSMVGGVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQGSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24598631 24601021 - ClCG04G009675.1 Cla04g00953 271181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00953 233 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Cla04g00953 233 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 202 - -
Cla04g00953 233 MobiDBLite consensus disorder prediction 1 20 - -
Cla04g00953 233 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Cla04g00953 233 Gene3D - 72 137 - -
Cla04g00953 233 SMART HOX_1 75 136 IPR001356 GO:0003677
Cla04g00953 233 CDD homeodomain 76 133 IPR001356 GO:0003677
Cla04g00953 233 Pfam Homeobox associated leucine zipper 132 166 IPR003106 GO:0006355|GO:0043565
Cla04g00953 233 Coils Coil 131 165 - -
Cla04g00953 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 202 IPR045224 GO:0003700
Cla04g00953 233 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Cla04g00953 233 SUPERFAMILY Homeodomain-like 68 134 IPR009057 -
Cla04g00953 233 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Cla04g00953 233 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00953 Cla10g01857 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00953 Cla-Chr4:24598631 Cla01g01817 Cla-Chr1:33073296 8.57E-31 dispersed
Cla01g01886 Cla-Chr1:33680655 Cla04g00953 Cla-Chr4:24598631 7.91E-26 transposed
Cla10g01857 Cla-Chr10:34485536 Cla04g00953 Cla-Chr4:24598631 2.18E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60923 PF00046 Homeodomain 1.80E-17 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00953 - - csv:101206385 336.265