Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00964 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAACTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTTTTGGCGGAATGCATCGTTTTGTCTGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTAAATATTGCACTAGAGACGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTATACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGCAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCCGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACGTTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAACATGTCATTAGTTACTCAATGA 2586 43.39 MEMPGRRSDYSLLSQIPDEEVGTGTSTSFYDSIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVFLAECIVLSVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTIQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNMSLVTQ 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24754951 24761994 + ClCG04G009780.2 Cla04g00964 271192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00964 861 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 119 851 - -
Cla04g00964 861 SMART serkin_6 586 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00964 861 Pfam Ethylene-responsive protein kinase Le-CTR1 178 394 - -
Cla04g00964 861 ProSiteProfiles Protein kinase domain profile. 586 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g00964 861 SUPERFAMILY Protein kinase-like (PK-like) 564 840 IPR011009 -
Cla04g00964 861 PRINTS Tyrosine kinase catalytic domain signature 811 833 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 PRINTS Tyrosine kinase catalytic domain signature 748 758 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 PRINTS Tyrosine kinase catalytic domain signature 660 673 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 PRINTS Tyrosine kinase catalytic domain signature 701 719 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 PRINTS Tyrosine kinase catalytic domain signature 767 789 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Cla04g00964 861 ProSitePatterns Protein kinases ATP-binding region signature. 592 613 IPR017441 GO:0005524
Cla04g00964 861 Pfam Protein tyrosine and serine/threonine kinase 587 840 IPR001245 GO:0004672|GO:0006468
Cla04g00964 861 Gene3D Transferase(Phosphotransferase) domain 1 665 854 - -
Cla04g00964 861 Gene3D Phosphorylase Kinase; domain 1 579 664 - -
Cla04g00964 861 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 119 851 - -
Cla04g00964 861 CDD STKc_MAP3K-like 592 840 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00964 Cla10g01842 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00964 Cla-Chr4:24754951 Cla05g01594 Cla-Chr5:27021993 7.70E-66 dispersed
Cla02g01746 Cla-Chr2:32381834 Cla04g00964 Cla-Chr4:24754951 1.15E-74 transposed
Cla02g01824 Cla-Chr2:33393522 Cla04g00964 Cla-Chr4:24754951 2.85E-49 transposed
Cla03g00400 Cla-Chr3:4584991 Cla04g00964 Cla-Chr4:24754951 2.50E-49 transposed
Cla03g01564 Cla-Chr3:31401704 Cla04g00964 Cla-Chr4:24754951 1.47E-31 transposed
Cla04g01054 Cla-Chr4:25706443 Cla04g00964 Cla-Chr4:24754951 5.03E-29 transposed
Cla05g00369 Cla-Chr5:3357633 Cla04g00964 Cla-Chr4:24754951 2.92E-51 transposed
Cla05g01617 Cla-Chr5:27507067 Cla04g00964 Cla-Chr4:24754951 5.59E-45 transposed
Cla05g01828 Cla-Chr5:30182438 Cla04g00964 Cla-Chr4:24754951 2.86E-29 transposed
Cla06g00427 Cla-Chr6:5198086 Cla04g00964 Cla-Chr4:24754951 4.43E-107 transposed
Cla06g01196 Cla-Chr6:25170058 Cla04g00964 Cla-Chr4:24754951 2.63E-50 transposed
Cla11g01222 Cla-Chr11:25519905 Cla04g00964 Cla-Chr4:24754951 1.57E-39 transposed
Cla11g01429 Cla-Chr11:27854706 Cla04g00964 Cla-Chr4:24754951 0 transposed
Cla10g01842 Cla-Chr10:34356811 Cla04g00964 Cla-Chr4:24754951 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80506 PF07714 PK_Tyr_Ser-Thr 4.20E-69 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00964 K14510 - csv:101208800 1563.51