Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00966 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCTAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGCCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATAGGAGCAGCTGCAGCTACAATAGGGTTAGATGGTAATCCTGCGAATGGGAGTACTAGAGAAAAAGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 47.4 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTAARDIQAAATSAATAIGAAAATIGLDGNPANGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24776841 24777416 - ClCG04G009800.1 Cla04g00966 271194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00966 191 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Cla04g00966 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Cla04g00966 191 MobiDBLite consensus disorder prediction 1 31 - -
Cla04g00966 191 MobiDBLite consensus disorder prediction 1 15 - -
Cla04g00966 191 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Cla04g00966 191 MobiDBLite consensus disorder prediction 111 135 - -
Cla04g00966 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 10 191 - -
Cla04g00966 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Cla04g00966 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cla04g00966 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 191 - -
Cla04g00966 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Cla04g00966 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Cla04g00966 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00966 Cla10g01829 CCT
Cla04g00966 Cla10g01829 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00966 Cla-Chr4:24776841 Cla10g01830 Cla-Chr10:34267959 6.90E-58 dispersed
Cla10g01829 Cla-Chr10:34256760 Cla04g00966 Cla-Chr4:24776841 6.06E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60924 PF00847 AP2 1.40E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00966 - - bhj:120074356 285.034